PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxd3 | dr11_v1_chr6_-_32093830_32093830 | 0.74 | 2.6e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_48049202 Show fit | 4.24 |
ENSDART00000027158
|
proteasome 26S subunit, non-ATPase 3 |
|
chr7_-_28611145 Show fit | 3.12 |
ENSDART00000054366
|
signal peptide, CUB domain, EGF-like 2 |
|
chr19_+_15443353 Show fit | 2.88 |
ENSDART00000135923
|
lin-28 homolog A (C. elegans) |
|
chr23_-_27152866 Show fit | 2.86 |
ENSDART00000141305
|
si:dkey-157g16.6 |
|
chr16_+_19537073 Show fit | 2.67 |
ENSDART00000190590
|
sp8 transcription factor b |
|
chr2_-_44777592 Show fit | 2.66 |
ENSDART00000113351
ENSDART00000169310 |
non-SMC condensin I complex, subunit D2 |
|
chr17_-_114121 Show fit | 2.48 |
ENSDART00000172408
ENSDART00000157784 |
Rho GTPase activating protein 11A |
|
chr7_+_21787507 Show fit | 2.37 |
ENSDART00000100936
|
transmembrane protein 88 b |
|
chr12_+_28888975 Show fit | 2.15 |
ENSDART00000076362
|
phosphorylase kinase, gamma 2 (testis) |
|
chr6_-_25201810 Show fit | 2.13 |
ENSDART00000168683
|
leucine rich repeat containing 8 VRAC subunit C |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.5 | GO:0008345 | larval locomotory behavior(GO:0008345) larval behavior(GO:0030537) |
0.3 | 4.0 | GO:0050482 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
0.1 | 3.8 | GO:0090090 | negative regulation of canonical Wnt signaling pathway(GO:0090090) |
1.2 | 3.7 | GO:0060845 | lymphatic endothelial cell fate commitment(GO:0060838) venous endothelial cell differentiation(GO:0060843) venous endothelial cell fate commitment(GO:0060845) |
0.7 | 3.7 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) |
0.3 | 3.2 | GO:0042694 | muscle cell fate specification(GO:0042694) |
0.0 | 3.2 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
0.2 | 3.1 | GO:0051382 | kinetochore assembly(GO:0051382) |
0.1 | 2.9 | GO:0060037 | pharyngeal system development(GO:0060037) |
0.7 | 2.7 | GO:0010032 | meiotic chromosome condensation(GO:0010032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.5 | GO:0005654 | nucleoplasm(GO:0005654) |
0.0 | 7.2 | GO:0005819 | spindle(GO:0005819) |
0.1 | 6.3 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 5.7 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
0.1 | 5.0 | GO:0000779 | condensed chromosome, centromeric region(GO:0000779) |
0.0 | 4.6 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.4 | 4.1 | GO:0008541 | proteasome regulatory particle, lid subcomplex(GO:0008541) |
0.0 | 3.8 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.7 | 3.4 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.0 | 2.9 | GO:0005730 | nucleolus(GO:0005730) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 41.7 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
0.0 | 8.8 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 5.8 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 4.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 4.2 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.2 | 3.9 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.1 | 3.8 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.5 | 3.7 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.0 | 3.5 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.0 | 3.5 | GO:0003713 | transcription coactivator activity(GO:0003713) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.2 | 5.6 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 5.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 3.9 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.1 | 3.6 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 2.9 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 2.9 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 2.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 2.6 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 2.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 6.1 | REACTOME REGULATION OF ORNITHINE DECARBOXYLASE ODC | Genes involved in Regulation of ornithine decarboxylase (ODC) |
0.1 | 4.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 3.7 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 3.4 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 3.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.0 | 3.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 2.8 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.1 | 2.8 | REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX | Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex |
0.2 | 2.6 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |