PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxq1a | dr11_v1_chr2_-_722156_722170 | -0.40 | 9.1e-02 | Click! |
foxh1 | dr11_v1_chr12_-_13729263_13729263 | -0.40 | 9.3e-02 | Click! |
foxq1b | dr11_v1_chr20_+_26683933_26683940 | 0.05 | 8.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_+_15534815 Show fit | 2.21 |
ENSDART00000159426
|
myristoylated alanine-rich protein kinase C substrate b |
|
chr18_+_20034023 Show fit | 1.55 |
ENSDART00000139441
|
mortality factor 4 like 1 |
|
chr22_+_15960005 Show fit | 1.55 |
ENSDART00000033617
|
scl/tal1 interrupting locus |
|
chr22_+_15960514 Show fit | 1.52 |
ENSDART00000181617
|
scl/tal1 interrupting locus |
|
chr22_+_15959844 Show fit | 1.44 |
ENSDART00000182201
|
scl/tal1 interrupting locus |
|
chr8_+_39634114 Show fit | 1.41 |
ENSDART00000144293
|
musashi RNA-binding protein 1 |
|
chr4_+_21741228 Show fit | 1.41 |
ENSDART00000112035
ENSDART00000127664 |
myogenic factor 5 |
|
chr14_+_34495216 Show fit | 1.38 |
ENSDART00000147756
|
wingless-type MMTV integration site family, member 8a |
|
chr25_+_18556588 Show fit | 1.35 |
ENSDART00000073726
|
caveolin 2 |
|
chr13_+_25286538 Show fit | 1.30 |
ENSDART00000180282
|
conserved helix-loop-helix ubiquitous kinase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.5 | GO:0071539 | protein localization to centrosome(GO:0071539) |
1.0 | 3.1 | GO:0021530 | spinal cord oligodendrocyte cell fate specification(GO:0021530) |
0.2 | 2.2 | GO:0003382 | epithelial cell morphogenesis(GO:0003382) |
0.3 | 1.9 | GO:0090342 | regulation of cell aging(GO:0090342) |
0.1 | 1.8 | GO:0019827 | stem cell population maintenance(GO:0019827) |
0.4 | 1.6 | GO:0043968 | histone H2A acetylation(GO:0043968) |
0.5 | 1.4 | GO:0002074 | extraocular skeletal muscle development(GO:0002074) |
0.5 | 1.4 | GO:0072111 | spinal cord anterior/posterior patterning(GO:0021512) cell proliferation involved in pronephros development(GO:0039015) cell proliferation involved in kidney development(GO:0072111) |
0.2 | 1.4 | GO:0001937 | negative regulation of endothelial cell proliferation(GO:0001937) |
0.1 | 1.4 | GO:0008078 | mesodermal cell migration(GO:0008078) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.6 | GO:0005814 | centriole(GO:0005814) |
0.0 | 2.5 | GO:0032432 | actin filament bundle(GO:0032432) |
0.0 | 1.9 | GO:0005882 | intermediate filament(GO:0005882) |
0.3 | 1.8 | GO:0070847 | core mediator complex(GO:0070847) |
0.0 | 1.7 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 1.6 | GO:0016580 | Sin3 complex(GO:0016580) |
0.1 | 1.6 | GO:0008278 | cohesin complex(GO:0008278) |
0.5 | 1.4 | GO:0097189 | apoptotic body(GO:0097189) |
0.1 | 1.4 | GO:0032391 | photoreceptor connecting cilium(GO:0032391) |
0.2 | 1.3 | GO:0008385 | IkappaB kinase complex(GO:0008385) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.0 | 1.7 | GO:0005109 | frizzled binding(GO:0005109) |
0.3 | 1.5 | GO:0004032 | alditol:NADP+ 1-oxidoreductase activity(GO:0004032) |
0.4 | 1.4 | GO:0051059 | NF-kappaB binding(GO:0051059) |
0.3 | 1.3 | GO:0008384 | IkappaB kinase activity(GO:0008384) |
0.4 | 1.2 | GO:0047173 | phosphatidylcholine-retinol O-acyltransferase activity(GO:0047173) |
0.2 | 1.2 | GO:0004001 | adenosine kinase activity(GO:0004001) |
0.0 | 1.2 | GO:0030165 | PDZ domain binding(GO:0030165) |
0.2 | 1.0 | GO:0008158 | hedgehog receptor activity(GO:0008158) |
0.3 | 0.9 | GO:0043739 | G/U mismatch-specific uracil-DNA glycosylase activity(GO:0043739) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.9 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 1.9 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 1.4 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 1.4 | PID ATM PATHWAY | ATM pathway |
0.0 | 1.4 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 1.3 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
0.0 | 1.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.0 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 1.0 | PID INTEGRIN3 PATHWAY | Beta3 integrin cell surface interactions |
0.0 | 1.0 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 2.0 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 1.4 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 1.3 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |
0.0 | 1.0 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 1.0 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 1.0 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.9 | REACTOME CHONDROITIN SULFATE DERMATAN SULFATE METABOLISM | Genes involved in Chondroitin sulfate/dermatan sulfate metabolism |
0.0 | 0.8 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.7 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |