PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxj1a | dr11_v1_chr3_+_60721342_60721342 | 0.78 | 7.1e-05 | Click! |
foxj1b | dr11_v1_chr12_+_20149707_20149707 | 0.58 | 1.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_20167206 Show fit | 4.83 |
ENSDART00000104874
ENSDART00000191995 |
prolyl 4-hydroxylase, alpha polypeptide I b |
|
chr14_-_41478265 Show fit | 4.62 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
|
chr10_-_35257458 Show fit | 4.18 |
ENSDART00000143890
ENSDART00000139107 ENSDART00000082445 |
proline rich 11 |
|
chr8_-_16697912 Show fit | 3.57 |
ENSDART00000076542
|
retinal pigment epithelium-specific protein 65b |
|
chr14_-_35462148 Show fit | 3.54 |
ENSDART00000045809
|
sushi-repeat containing protein, X-linked 2 |
|
chr15_+_26933196 Show fit | 3.54 |
ENSDART00000023842
|
protein phosphatase, Mg2+/Mn2+ dependent, 1Da |
|
chr16_+_40576679 Show fit | 3.49 |
ENSDART00000169412
ENSDART00000193464 |
cyclin E2 |
|
chr1_+_9153141 Show fit | 3.40 |
ENSDART00000081343
|
polo-like kinase 1 (Drosophila) |
|
chr15_+_34069746 Show fit | 3.31 |
ENSDART00000163513
|
ADP-ribosylation factor-like 4aa |
|
chr2_+_19195841 Show fit | 3.24 |
ENSDART00000163137
ENSDART00000161095 |
ELOVL fatty acid elongase 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 6.0 | GO:0034720 | histone H3-K4 demethylation(GO:0034720) |
1.3 | 5.1 | GO:0016108 | tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827) |
0.3 | 4.8 | GO:0018401 | peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) |
0.2 | 4.6 | GO:0046686 | response to cadmium ion(GO:0046686) |
0.1 | 4.3 | GO:0043967 | histone H4 acetylation(GO:0043967) |
0.1 | 3.9 | GO:0007050 | cell cycle arrest(GO:0007050) |
0.0 | 3.9 | GO:0042254 | ribosome biogenesis(GO:0042254) |
0.1 | 3.5 | GO:0008272 | sulfate transport(GO:0008272) |
0.1 | 3.5 | GO:1904029 | regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029) |
0.8 | 3.4 | GO:0071675 | regulation of macrophage chemotaxis(GO:0010758) positive regulation of macrophage chemotaxis(GO:0010759) skeletal muscle cell proliferation(GO:0014856) regulation of skeletal muscle cell proliferation(GO:0014857) mononuclear cell migration(GO:0071674) regulation of mononuclear cell migration(GO:0071675) positive regulation of lamellipodium organization(GO:1902745) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.0 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 6.1 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 4.6 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.0 | 4.4 | GO:0000785 | chromatin(GO:0000785) |
0.5 | 4.3 | GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671) |
0.1 | 4.3 | GO:0005814 | centriole(GO:0005814) |
0.1 | 4.1 | GO:0072686 | mitotic spindle(GO:0072686) |
0.1 | 3.8 | GO:0005643 | nuclear pore(GO:0005643) |
0.9 | 3.5 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.0 | 3.5 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 6.0 | GO:0034648 | histone demethylase activity (H3-dimethyl-K4 specific)(GO:0034648) |
0.1 | 5.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 5.4 | GO:0008013 | beta-catenin binding(GO:0008013) |
0.0 | 5.2 | GO:0008017 | microtubule binding(GO:0008017) |
1.3 | 5.1 | GO:0050251 | retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885) |
0.4 | 4.8 | GO:0004656 | procollagen-proline 4-dioxygenase activity(GO:0004656) |
0.0 | 4.5 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.1 | 4.0 | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity(GO:0008138) |
0.2 | 3.9 | GO:0051019 | mitogen-activated protein kinase binding(GO:0051019) |
0.1 | 3.9 | GO:0003678 | DNA helicase activity(GO:0003678) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.2 | 7.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 3.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 3.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.2 | 2.5 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.1 | 2.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.3 | 2.3 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 2.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 2.2 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 2.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 3.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.2 | 3.4 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.1 | 2.8 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.1 | 2.5 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.1 | 2.4 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
0.2 | 2.3 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.1 | 2.3 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.4 | 2.2 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.1 | 2.2 | REACTOME MYOGENESIS | Genes involved in Myogenesis |