PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxj2 | dr11_v1_chr16_-_12784373_12784373 | -0.83 | 1.1e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_24201437 Show fit | 2.44 |
ENSDART00000114113
|
SRY (sex determining region Y)-box 19a |
|
chr7_-_17337233 Show fit | 2.41 |
ENSDART00000050236
ENSDART00000102141 |
novel immune-type receptor 8 |
|
chr23_+_32335871 Show fit | 1.88 |
ENSDART00000149698
|
solute carrier family 39 (zinc transporter), member 5 |
|
chr16_+_54210554 Show fit | 1.81 |
ENSDART00000172622
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr7_-_54679595 Show fit | 1.79 |
ENSDART00000165320
|
cyclin D1 |
|
chr10_-_35257458 Show fit | 1.72 |
ENSDART00000143890
ENSDART00000139107 ENSDART00000082445 |
proline rich 11 |
|
chr14_+_20911310 Show fit | 1.63 |
ENSDART00000160318
|
lysozyme g-like 2 |
|
chr11_+_37768298 Show fit | 1.62 |
ENSDART00000166886
|
SRY (sex determining region Y)-box 13 |
|
chr16_-_6198543 Show fit | 1.57 |
ENSDART00000167505
|
catenin (cadherin-associated protein), beta 1 |
|
chr19_-_1948236 Show fit | 1.48 |
ENSDART00000163344
|
zinc and ring finger 2a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0009617 | response to bacterium(GO:0009617) |
0.2 | 1.9 | GO:0071578 | zinc II ion transmembrane import(GO:0071578) |
0.1 | 1.9 | GO:0003382 | epithelial cell morphogenesis(GO:0003382) |
0.4 | 1.8 | GO:0000012 | single strand break repair(GO:0000012) |
0.4 | 1.8 | GO:0031571 | mitotic G1 DNA damage checkpoint(GO:0031571) |
0.3 | 1.7 | GO:0070544 | histone H3-K36 demethylation(GO:0070544) |
0.0 | 1.7 | GO:0007050 | cell cycle arrest(GO:0007050) |
0.0 | 1.7 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
0.5 | 1.6 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
0.5 | 1.6 | GO:2000055 | positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 2.2 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.3 | 1.6 | GO:0005913 | cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915) |
0.0 | 1.5 | GO:0032040 | small-subunit processome(GO:0032040) |
0.2 | 1.1 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.1 | 1.1 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 1.1 | GO:0032432 | actin filament bundle(GO:0032432) |
0.1 | 0.9 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
0.1 | 0.9 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 1.8 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.0 | 1.8 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.2 | 1.7 | GO:0051864 | histone demethylase activity (H3-K36 specific)(GO:0051864) |
0.4 | 1.6 | GO:0003796 | lysozyme activity(GO:0003796) |
0.2 | 1.6 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.0 | 1.3 | GO:0000030 | mannosyltransferase activity(GO:0000030) |
0.1 | 1.2 | GO:0004586 | ornithine decarboxylase activity(GO:0004586) |
0.4 | 1.1 | GO:0004020 | adenylylsulfate kinase activity(GO:0004020) sulfate adenylyltransferase activity(GO:0004779) sulfate adenylyltransferase (ATP) activity(GO:0004781) |
0.0 | 1.1 | GO:0003688 | DNA replication origin binding(GO:0003688) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.8 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 1.8 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.6 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 1.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 1.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.1 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.9 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.8 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 1.8 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 1.8 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.1 | 1.7 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 1.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.5 | 1.6 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.1 | 1.2 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 1.2 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.0 | 1.2 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.2 | 1.1 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |