PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxk1 | dr11_v1_chr3_-_40933415_40933415 | 0.15 | 5.3e-01 | Click! |
foxj3 | dr11_v1_chr11_-_26362294_26362334 | -0.07 | 7.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_24305877 Show fit | 1.29 |
ENSDART00000144226
|
cathepsin L, like |
|
chr14_-_41478265 Show fit | 1.04 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
|
chr17_+_21295132 Show fit | 1.02 |
ENSDART00000103845
|
enolase family member 4 |
|
chr14_-_35462148 Show fit | 1.01 |
ENSDART00000045809
|
sushi-repeat containing protein, X-linked 2 |
|
chr7_-_60831082 Show fit | 0.99 |
ENSDART00000073654
ENSDART00000136999 |
pyruvate carboxylase b |
|
chr14_+_26439227 Show fit | 0.98 |
ENSDART00000054183
|
G protein-coupled receptor 137 |
|
chr15_+_19990068 Show fit | 0.91 |
ENSDART00000154033
ENSDART00000054428 |
zgc:112083 |
|
chr23_-_28025943 Show fit | 0.90 |
ENSDART00000181146
|
Sp5 transcription factor-like |
|
chr5_-_51998708 Show fit | 0.85 |
ENSDART00000097194
|
serine incorporator 5 |
|
chr18_-_24988645 Show fit | 0.84 |
ENSDART00000136434
ENSDART00000085735 |
chromodomain helicase DNA binding protein 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.1 | GO:0016123 | tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827) |
0.1 | 1.1 | GO:1904263 | positive regulation of TORC1 signaling(GO:1904263) |
0.1 | 1.0 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
0.1 | 1.0 | GO:0046686 | response to cadmium ion(GO:0046686) |
0.0 | 0.9 | GO:0006658 | phosphatidylserine metabolic process(GO:0006658) |
0.0 | 0.9 | GO:0036342 | post-anal tail morphogenesis(GO:0036342) |
0.1 | 0.8 | GO:1902292 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
0.1 | 0.8 | GO:0097345 | mitochondrial outer membrane permeabilization(GO:0097345) |
0.1 | 0.8 | GO:0006611 | protein export from nucleus(GO:0006611) |
0.0 | 0.7 | GO:0008078 | mesodermal cell migration(GO:0008078) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.1 | 1.0 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 0.9 | GO:0072686 | mitotic spindle(GO:0072686) |
0.0 | 0.9 | GO:0005643 | nuclear pore(GO:0005643) |
0.2 | 0.8 | GO:0000811 | GINS complex(GO:0000811) |
0.0 | 0.8 | GO:0005814 | centriole(GO:0005814) |
0.0 | 0.7 | GO:0032039 | integrator complex(GO:0032039) |
0.1 | 0.6 | GO:0097134 | cyclin E1-CDK2 complex(GO:0097134) |
0.1 | 0.6 | GO:0005663 | DNA replication factor C complex(GO:0005663) |
0.1 | 0.6 | GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex(GO:0005671) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.3 | 1.1 | GO:0052885 | retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885) |
0.3 | 1.0 | GO:0004736 | pyruvate carboxylase activity(GO:0004736) |
0.1 | 1.0 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.0 | 0.9 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.1 | 0.8 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.0 | 0.8 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
0.0 | 0.8 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.2 | 0.7 | GO:0051059 | NF-kappaB binding(GO:0051059) |
0.1 | 0.6 | GO:0043515 | kinetochore binding(GO:0043515) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.8 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.5 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 0.4 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.4 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.0 | 0.2 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.0 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
0.0 | 0.5 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.5 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.0 | 0.4 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |
0.0 | 0.4 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.0 | 0.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
0.0 | 0.3 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.0 | 0.2 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |