PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxl1 | dr11_v1_chr18_-_17485419_17485419 | -0.63 | 3.5e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_306036 Show fit | 6.59 |
ENSDART00000103659
|
mesogenin 1 |
|
chr19_-_41518922 Show fit | 4.76 |
ENSDART00000164483
ENSDART00000062080 |
chromatin accessibility complex 1 |
|
chr12_-_16898140 Show fit | 4.71 |
ENSDART00000152656
|
Cathepsin L1-like |
|
chr12_-_16720432 Show fit | 3.95 |
ENSDART00000152261
ENSDART00000152154 |
si:dkey-26g8.4 |
|
chr8_-_50259448 Show fit | 3.33 |
ENSDART00000146056
|
NK3 homeobox 1 |
|
chr20_-_34711528 Show fit | 3.06 |
ENSDART00000061555
|
si:ch211-63o20.7 |
|
chr16_-_27566552 Show fit | 3.04 |
ENSDART00000142102
|
zgc:153215 |
|
chr11_+_41981959 Show fit | 2.97 |
ENSDART00000055707
|
hairy and enhancer of split-related 15, tandem duplicate 1 |
|
chr4_+_5868034 Show fit | 2.94 |
ENSDART00000166591
|
UTP20 small subunit (SSU) processome component |
|
chr13_-_24260609 Show fit | 2.93 |
ENSDART00000138747
|
URB2 ribosome biogenesis 2 homolog (S. cerevisiae) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.2 | 6.6 | GO:0048341 | paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341) |
0.0 | 5.7 | GO:0032259 | methylation(GO:0032259) |
0.1 | 4.8 | GO:0060319 | primitive erythrocyte differentiation(GO:0060319) |
0.1 | 3.9 | GO:1902036 | regulation of hematopoietic stem cell differentiation(GO:1902036) |
0.0 | 3.9 | GO:0007219 | Notch signaling pathway(GO:0007219) |
1.1 | 3.2 | GO:1904251 | regulation of bile acid biosynthetic process(GO:0070857) regulation of bile acid metabolic process(GO:1904251) |
0.0 | 2.8 | GO:0051225 | spindle assembly(GO:0051225) |
0.6 | 2.6 | GO:0051661 | maintenance of centrosome location(GO:0051661) |
0.6 | 2.6 | GO:0043968 | histone H2A acetylation(GO:0043968) |
0.5 | 2.2 | GO:0014743 | regulation of muscle hypertrophy(GO:0014743) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.7 | GO:0005730 | nucleolus(GO:0005730) |
0.4 | 4.8 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.1 | 3.5 | GO:0030686 | 90S preribosome(GO:0030686) |
0.0 | 3.1 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 2.9 | GO:0000777 | condensed chromosome kinetochore(GO:0000777) |
0.1 | 2.7 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.3 | 2.6 | GO:0031616 | spindle pole centrosome(GO:0031616) |
0.2 | 2.6 | GO:0016580 | Sin3 complex(GO:0016580) |
0.2 | 2.2 | GO:0071005 | U2-type precatalytic spliceosome(GO:0071005) |
0.2 | 2.1 | GO:0070822 | Sin3-type complex(GO:0070822) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.8 | GO:0046983 | protein dimerization activity(GO:0046983) |
0.0 | 3.5 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
0.0 | 3.3 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.2 | 3.2 | GO:0005007 | fibroblast growth factor-activated receptor activity(GO:0005007) |
0.1 | 3.0 | GO:0051011 | microtubule minus-end binding(GO:0051011) |
0.1 | 2.8 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.4 | 2.7 | GO:0004045 | aminoacyl-tRNA hydrolase activity(GO:0004045) |
0.2 | 2.7 | GO:0009008 | DNA-methyltransferase activity(GO:0009008) |
0.3 | 2.6 | GO:0035198 | miRNA binding(GO:0035198) |
0.2 | 2.5 | GO:0008296 | 3'-5'-exodeoxyribonuclease activity(GO:0008296) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 4.3 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 3.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 2.4 | PID LKB1 PATHWAY | LKB1 signaling events |
0.2 | 2.2 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 2.0 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.3 | 1.9 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
0.1 | 1.8 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.6 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.0 | 1.4 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | REACTOME DESTABILIZATION OF MRNA BY AUF1 HNRNP D0 | Genes involved in Destabilization of mRNA by AUF1 (hnRNP D0) |
0.1 | 3.3 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.4 | 3.2 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.1 | 2.2 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 2.1 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.1 | 2.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.2 | 1.9 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.1 | 1.8 | REACTOME SCFSKP2 MEDIATED DEGRADATION OF P27 P21 | Genes involved in SCF(Skp2)-mediated degradation of p27/p21 |
0.0 | 1.5 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |
0.1 | 1.4 | REACTOME EICOSANOID LIGAND BINDING RECEPTORS | Genes involved in Eicosanoid ligand-binding receptors |