PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxm1 | dr11_v1_chr4_-_5831522_5831522 | 0.69 | 9.8e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_47822597 Show fit | 2.02 |
ENSDART00000193236
ENSDART00000161391 |
|
|
chr7_-_41554047 Show fit | 1.79 |
ENSDART00000174144
|
plexin domain containing 2 |
|
chr4_+_15944245 Show fit | 1.65 |
ENSDART00000134594
|
si:dkey-117n7.3 |
|
chr7_+_15736230 Show fit | 1.37 |
ENSDART00000109942
|
multiple C2 domains, transmembrane 2b |
|
chr14_-_41478265 Show fit | 1.30 |
ENSDART00000149886
ENSDART00000016002 |
tetraspanin 7 |
|
chr14_+_22114918 Show fit | 1.30 |
ENSDART00000166610
|
thioredoxin-related transmembrane protein 2a |
|
chr7_+_39401388 Show fit | 1.25 |
ENSDART00000144750
|
troponin I type 2b (skeletal, fast), tandem duplicate 1 |
|
chr20_+_25904199 Show fit | 1.14 |
ENSDART00000016864
|
solute carrier family 35, member F6 |
|
chr22_-_17606575 Show fit | 1.14 |
ENSDART00000183951
|
glutathione peroxidase 4a |
|
chr17_+_23975762 Show fit | 1.11 |
ENSDART00000155941
|
exportin 1 (CRM1 homolog, yeast) b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | GO:0031297 | replication fork processing(GO:0031297) |
0.1 | 1.6 | GO:0036297 | interstrand cross-link repair(GO:0036297) |
0.0 | 1.3 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.0 | 1.3 | GO:0060048 | cardiac muscle contraction(GO:0060048) |
0.1 | 1.2 | GO:0070212 | protein poly-ADP-ribosylation(GO:0070212) |
0.1 | 1.1 | GO:0097345 | mitochondrial outer membrane permeabilization(GO:0097345) |
0.1 | 1.1 | GO:0000056 | ribosomal small subunit export from nucleus(GO:0000056) |
0.1 | 1.0 | GO:0040016 | embryonic cleavage(GO:0040016) |
0.1 | 0.9 | GO:0032515 | negative regulation of phosphoprotein phosphatase activity(GO:0032515) |
0.1 | 0.9 | GO:0051382 | kinetochore assembly(GO:0051382) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.5 | GO:0035101 | FACT complex(GO:0035101) |
0.0 | 1.9 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 1.4 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.0 | 1.4 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.0 | 1.2 | GO:0000779 | condensed chromosome, centromeric region(GO:0000779) |
0.0 | 0.9 | GO:0000776 | kinetochore(GO:0000776) |
0.1 | 0.8 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) cytoplasmic exosome (RNase complex)(GO:0000177) |
0.0 | 0.8 | GO:0071564 | npBAF complex(GO:0071564) |
0.1 | 0.7 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
0.0 | 0.7 | GO:0070187 | telosome(GO:0070187) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 2.1 | GO:0015036 | disulfide oxidoreductase activity(GO:0015036) |
0.0 | 1.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 1.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.1 | 1.2 | GO:1990404 | protein ADP-ribosylase activity(GO:1990404) |
0.2 | 1.1 | GO:0047066 | phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066) |
0.1 | 1.1 | GO:0005049 | nuclear export signal receptor activity(GO:0005049) |
0.0 | 1.0 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 1.0 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.1 | 0.9 | GO:0051721 | protein phosphatase 2A binding(GO:0051721) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.0 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 2.5 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.8 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.9 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
0.0 | 0.8 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.8 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.7 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 0.7 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 0.6 | PID BARD1 PATHWAY | BARD1 signaling events |
0.0 | 0.6 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | REACTOME KINESINS | Genes involved in Kinesins |
0.0 | 1.2 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.1 | 0.8 | REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE | Genes involved in mRNA Decay by 3' to 5' Exoribonuclease |
0.0 | 0.8 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.1 | 0.7 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 0.7 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.0 | 0.7 | REACTOME PROCESSING OF INTRONLESS PRE MRNAS | Genes involved in Processing of Intronless Pre-mRNAs |
0.0 | 0.7 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.0 | 0.6 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.6 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |