PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxn1 | dr11_v1_chr15_-_28148314_28148314 | -0.51 | 2.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_+_51579851 Show fit | 1.09 |
ENSDART00000163847
|
NK6 homeobox 2 |
|
chr13_-_21650404 Show fit | 1.03 |
ENSDART00000078352
|
tetraspanin 14 |
|
chr21_-_4849029 Show fit | 1.00 |
ENSDART00000168930
ENSDART00000151019 |
notch 1a |
|
chr14_+_21754521 Show fit | 0.93 |
ENSDART00000111839
|
lysine (K)-specific demethylase 2Ab |
|
chr16_-_17258111 Show fit | 0.88 |
ENSDART00000079497
|
EMG1 N1-specific pseudouridine methyltransferase |
|
chr18_+_619619 Show fit | 0.86 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
|
chr3_-_60175470 Show fit | 0.85 |
ENSDART00000156597
|
si:ch73-364h19.1 |
|
chr9_-_46415847 Show fit | 0.85 |
ENSDART00000009790
|
connexin 43.4 |
|
chr23_+_27652906 Show fit | 0.81 |
ENSDART00000077931
|
wingless-type MMTV integration site family, member 1 |
|
chr23_+_30898013 Show fit | 0.80 |
ENSDART00000146859
|
Cdk5 and Abl enzyme substrate 2a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | GO:0003310 | pancreatic A cell differentiation(GO:0003310) |
0.3 | 1.0 | GO:0021531 | spinal cord radial glial cell differentiation(GO:0021531) |
0.0 | 1.0 | GO:0006413 | translational initiation(GO:0006413) |
0.1 | 0.9 | GO:0070475 | rRNA base methylation(GO:0070475) |
0.0 | 0.9 | GO:0006825 | copper ion transport(GO:0006825) |
0.0 | 0.9 | GO:0006482 | protein demethylation(GO:0006482) protein dealkylation(GO:0008214) |
0.2 | 0.8 | GO:0010332 | response to gamma radiation(GO:0010332) cellular response to gamma radiation(GO:0071480) |
0.1 | 0.8 | GO:0035284 | central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284) |
0.2 | 0.7 | GO:2000055 | positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055) |
0.2 | 0.7 | GO:0072045 | convergent extension involved in nephron morphogenesis(GO:0072045) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 0.9 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.0 | 0.9 | GO:0032040 | small-subunit processome(GO:0032040) |
0.1 | 0.8 | GO:0036038 | MKS complex(GO:0036038) |
0.1 | 0.7 | GO:0005913 | cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915) |
0.1 | 0.6 | GO:0016442 | RISC complex(GO:0016442) RNAi effector complex(GO:0031332) |
0.0 | 0.6 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
0.0 | 0.6 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.2 | 0.5 | GO:0097361 | CIA complex(GO:0097361) |
0.1 | 0.5 | GO:0035301 | Hedgehog signaling complex(GO:0035301) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.1 | 1.0 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.0 | 1.0 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 1.0 | GO:0005109 | frizzled binding(GO:0005109) |
0.1 | 0.9 | GO:0016724 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.1 | 0.9 | GO:0008649 | rRNA methyltransferase activity(GO:0008649) |
0.0 | 0.9 | GO:0032452 | histone demethylase activity(GO:0032452) |
0.1 | 0.8 | GO:0001217 | bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |
0.2 | 0.7 | GO:0050508 | glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity(GO:0050508) |
0.0 | 0.7 | GO:0000340 | RNA 7-methylguanosine cap binding(GO:0000340) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.8 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 0.7 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.6 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.0 | 0.6 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.6 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 0.5 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.0 | 0.5 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
0.0 | 0.5 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 0.4 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 0.8 | REACTOME INTEGRATION OF PROVIRUS | Genes involved in Integration of provirus |
0.0 | 0.8 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.2 | 0.7 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.0 | 0.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.0 | 0.7 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.0 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.6 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 0.6 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.1 | 0.5 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |