PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxo6a | dr11_v1_chr16_-_7362806_7362806 | 0.77 | 1.3e-04 | Click! |
foxo3b | dr11_v1_chr20_-_32332736_32332736 | 0.48 | 3.9e-02 | Click! |
foxo6b | dr11_v1_chr19_+_15571290_15571290 | 0.42 | 7.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_26118855 Show fit | 4.02 |
ENSDART00000009028
|
elastase 3 like |
|
chr2_+_10134345 Show fit | 3.25 |
ENSDART00000100725
|
alpha-2-HS-glycoprotein 2 |
|
chr14_-_46238186 Show fit | 3.02 |
ENSDART00000173245
|
si:ch211-113d11.6 |
|
chr6_+_30091811 Show fit | 2.29 |
ENSDART00000088403
|
melanotransferrin |
|
chr1_+_5576151 Show fit | 2.28 |
ENSDART00000109756
|
carboxypeptidase O |
|
chr3_-_61203203 Show fit | 2.15 |
ENSDART00000171787
|
parvalbumin 1 |
|
chr1_-_43915423 Show fit | 1.92 |
ENSDART00000181915
ENSDART00000113673 |
secretory calcium-binding phosphoprotein 5 |
|
chr5_+_38726854 Show fit | 1.91 |
ENSDART00000138484
ENSDART00000142867 |
si:dkey-58f10.7 |
|
chr18_-_44527124 Show fit | 1.79 |
ENSDART00000189471
|
amyloid beta (A4) precursor-like protein 2 |
|
chr5_-_12031174 Show fit | 1.78 |
ENSDART00000159896
|
cytosolic arginine sensor for mTORC1 subunit 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.0 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.1 | 2.3 | GO:0006826 | iron ion transport(GO:0006826) |
0.6 | 1.8 | GO:0042245 | RNA repair(GO:0042245) |
0.1 | 1.8 | GO:1904262 | negative regulation of TORC1 signaling(GO:1904262) |
0.0 | 1.8 | GO:1990778 | protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778) |
0.3 | 1.7 | GO:0070587 | regulation of cell-cell adhesion involved in gastrulation(GO:0070587) |
0.3 | 1.7 | GO:0032367 | intracellular cholesterol transport(GO:0032367) |
0.4 | 1.6 | GO:0099563 | modification of synaptic structure(GO:0099563) |
0.0 | 1.4 | GO:0051028 | mRNA transport(GO:0051028) |
0.1 | 1.3 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.0 | 2.3 | GO:0055037 | recycling endosome(GO:0055037) |
0.2 | 1.8 | GO:0061700 | GATOR2 complex(GO:0061700) |
0.0 | 1.8 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 1.6 | GO:0032589 | neuron projection membrane(GO:0032589) dendrite membrane(GO:0032590) |
0.0 | 1.6 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.0 | 1.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 1.3 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.2 | 1.2 | GO:0070062 | extracellular exosome(GO:0070062) |
0.1 | 1.2 | GO:0016363 | nuclear matrix(GO:0016363) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | GO:0008236 | serine-type peptidase activity(GO:0008236) serine hydrolase activity(GO:0017171) |
0.1 | 3.3 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
0.0 | 2.5 | GO:0008201 | heparin binding(GO:0008201) |
0.1 | 2.3 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.6 | 1.8 | GO:0034618 | arginine binding(GO:0034618) |
0.4 | 1.8 | GO:0043734 | oxidative DNA demethylase activity(GO:0035516) DNA-N1-methyladenine dioxygenase activity(GO:0043734) RNA N6-methyladenosine dioxygenase activity(GO:1990931) |
0.4 | 1.7 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.1 | 1.6 | GO:0043495 | protein anchor(GO:0043495) |
0.0 | 1.5 | GO:0030295 | kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
0.0 | 1.4 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.3 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 1.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 1.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 0.9 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.1 | 0.9 | REACTOME P2Y RECEPTORS | Genes involved in P2Y receptors |
0.3 | 0.8 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.0 | 0.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.0 | 0.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 0.4 | REACTOME SEROTONIN RECEPTORS | Genes involved in Serotonin receptors |
0.0 | 0.3 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |