PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
foxo4 | dr11_v1_chr14_+_30910114_30910114 | 0.79 | 5.7e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_24002503 Show fit | 1.86 |
ENSDART00000164702
|
chitinase, acidic.2 |
|
chr13_-_33207367 Show fit | 1.71 |
ENSDART00000146138
ENSDART00000109667 ENSDART00000182741 |
thyroid hormone receptor interactor 11 |
|
chr15_+_46313082 Show fit | 1.69 |
ENSDART00000153830
|
si:ch1073-190k2.1 |
|
chr3_-_60142530 Show fit | 1.46 |
ENSDART00000153247
|
si:ch211-120g10.1 |
|
chr13_-_42400647 Show fit | 1.20 |
ENSDART00000043069
|
membrane-associated ring finger (C3HC4) 5 |
|
chr17_+_33158350 Show fit | 1.16 |
ENSDART00000104476
|
sorting nexin 9a |
|
chr11_+_6819050 Show fit | 1.13 |
ENSDART00000104289
|
RAB3A, member RAS oncogene family, b |
|
chr13_-_23665580 Show fit | 1.11 |
ENSDART00000144282
|
mitogen-activated protein kinase kinase kinase 21 |
|
chr22_+_38276024 Show fit | 1.06 |
ENSDART00000143792
|
REST corepressor 3 |
|
chr4_-_1720648 Show fit | 1.05 |
ENSDART00000103484
|
growth arrest-specific 2 like 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.2 | GO:0006032 | chitin catabolic process(GO:0006032) |
0.0 | 1.7 | GO:0030901 | midbrain development(GO:0030901) |
0.0 | 1.7 | GO:0007030 | Golgi organization(GO:0007030) |
0.0 | 1.5 | GO:0016575 | histone deacetylation(GO:0016575) |
0.1 | 1.4 | GO:0043507 | activation of JUN kinase activity(GO:0007257) positive regulation of JUN kinase activity(GO:0043507) |
0.0 | 1.2 | GO:0000281 | mitotic cytokinesis(GO:0000281) |
0.4 | 1.1 | GO:0031630 | regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031630) |
0.2 | 1.1 | GO:0021534 | cell proliferation in hindbrain(GO:0021534) |
0.1 | 1.0 | GO:0032793 | positive regulation of CREB transcription factor activity(GO:0032793) |
0.1 | 1.0 | GO:1901642 | nucleoside transport(GO:0015858) nucleoside transmembrane transport(GO:1901642) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.0 | 1.2 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.0 | GO:0034706 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.1 | 0.9 | GO:0071797 | LUBAC complex(GO:0071797) |
0.1 | 0.8 | GO:0033010 | paranodal junction(GO:0033010) |
0.0 | 0.8 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.2 | 0.7 | GO:0031213 | RSF complex(GO:0031213) |
0.0 | 0.7 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.2 | 0.6 | GO:0010369 | chromocenter(GO:0010369) |
0.1 | 0.6 | GO:0033557 | Slx1-Slx4 complex(GO:0033557) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.2 | GO:0004568 | chitinase activity(GO:0004568) |
0.1 | 1.9 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.1 | 1.7 | GO:0031267 | small GTPase binding(GO:0031267) |
0.2 | 1.5 | GO:0035173 | histone kinase activity(GO:0035173) |
0.4 | 1.1 | GO:1990226 | histone methyltransferase binding(GO:1990226) |
0.1 | 1.1 | GO:0004706 | JUN kinase kinase kinase activity(GO:0004706) |
0.1 | 1.1 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.1 | 1.0 | GO:0008140 | cAMP response element binding protein binding(GO:0008140) |
0.0 | 1.0 | GO:0015370 | solute:sodium symporter activity(GO:0015370) |
0.1 | 0.8 | GO:0050291 | sphingosine N-acyltransferase activity(GO:0050291) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 0.8 | PID RHOA PATHWAY | RhoA signaling pathway |
0.0 | 0.8 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 0.5 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.5 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.3 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.0 | 0.3 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.3 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.0 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |
0.1 | 1.0 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 0.8 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.1 | 0.8 | REACTOME IRAK1 RECRUITS IKK COMPLEX | Genes involved in IRAK1 recruits IKK complex |
0.0 | 0.8 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 0.6 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |
0.0 | 0.6 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.1 | 0.5 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.5 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |