PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gata2a | dr11_v1_chr11_-_3860534_3860534 | -0.77 | 1.1e-04 | Click! |
gata1b | dr11_v1_chr8_-_7475917_7475917 | 0.51 | 2.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_32421046 Show fit | 15.44 |
ENSDART00000075567
|
ectonucleotide pyrophosphatase/phosphodiesterase 7, tandem duplicate 1 |
|
chr5_-_30620625 Show fit | 14.77 |
ENSDART00000098273
|
transcobalamin like |
|
chr7_+_35075847 Show fit | 14.21 |
ENSDART00000193469
ENSDART00000037346 |
chymotrypsinogen B1 |
|
chr2_-_51794472 Show fit | 14.12 |
ENSDART00000186652
|
|
|
chr16_-_36834505 Show fit | 13.21 |
ENSDART00000141275
ENSDART00000139588 ENSDART00000041993 |
purine nucleoside phosphorylase 4b |
|
chr19_+_8606883 Show fit | 12.60 |
ENSDART00000054469
ENSDART00000185264 |
S100 calcium binding protein A10a |
|
chr14_+_36738069 Show fit | 11.12 |
ENSDART00000105590
|
tryptophan 2,3-dioxygenase a |
|
chr18_-_42830563 Show fit | 9.46 |
ENSDART00000191488
|
tetratricopeptide repeat domain 36 |
|
chr12_-_3903886 Show fit | 9.08 |
ENSDART00000184214
ENSDART00000041082 |
glycerophosphodiester phosphodiesterase domain containing 3b |
|
chr21_-_40880317 Show fit | 9.02 |
ENSDART00000100054
ENSDART00000137696 |
elastin b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 15.4 | GO:0006685 | sphingomyelin catabolic process(GO:0006685) |
0.4 | 12.7 | GO:0042632 | cholesterol homeostasis(GO:0042632) sterol homeostasis(GO:0055092) |
1.4 | 11.1 | GO:0019441 | tryptophan catabolic process to kynurenine(GO:0019441) |
0.3 | 11.0 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
1.7 | 10.2 | GO:0045852 | pH elevation(GO:0045852) intracellular pH elevation(GO:0051454) |
0.1 | 9.6 | GO:0010107 | potassium ion import(GO:0010107) |
0.1 | 9.0 | GO:0034976 | response to endoplasmic reticulum stress(GO:0034976) |
2.9 | 8.8 | GO:0035971 | peptidyl-histidine dephosphorylation(GO:0035971) |
0.0 | 8.3 | GO:0006397 | mRNA processing(GO:0006397) |
0.7 | 7.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 25.9 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 17.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.3 | 11.0 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 9.5 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.2 | 9.0 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.2 | 8.1 | GO:0043204 | perikaryon(GO:0043204) |
0.4 | 8.0 | GO:0005605 | basal lamina(GO:0005605) laminin complex(GO:0043256) |
0.1 | 6.6 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.2 | 6.5 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 6.4 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 19.1 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
1.1 | 15.4 | GO:0004767 | sphingomyelin phosphodiesterase activity(GO:0004767) |
0.1 | 13.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.5 | 13.2 | GO:0004731 | purine-nucleoside phosphorylase activity(GO:0004731) |
3.7 | 11.1 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.6 | 11.0 | GO:0019531 | oxalate transmembrane transporter activity(GO:0019531) |
0.0 | 9.2 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.7 | 9.0 | GO:0003756 | protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864) |
2.2 | 8.8 | GO:0101006 | protein histidine phosphatase activity(GO:0101006) |
0.1 | 7.7 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.1 | PID ARF 3PATHWAY | Arf1 pathway |
0.1 | 4.0 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.1 | 4.0 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.2 | 3.5 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.1 | 3.5 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 3.3 | PID FGF PATHWAY | FGF signaling pathway |
0.2 | 2.8 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.1 | 2.5 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 1.8 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 1.7 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 14.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
1.0 | 11.4 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.1 | 10.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.4 | 6.5 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 4.1 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 4.0 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
1.2 | 3.6 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.4 | 3.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.3 | 3.5 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.0 | 3.5 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |