PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gata3 | dr11_v1_chr4_-_25064510_25064510 | 0.24 | 3.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_-_43079161 Show fit | 11.01 |
ENSDART00000144151
|
janus kinase and microtubule interacting protein 2 |
|
chr20_-_47550577 Show fit | 10.94 |
ENSDART00000187361
|
|
|
chr7_+_56615554 Show fit | 10.90 |
ENSDART00000098430
|
dipeptidase 1 |
|
chr5_-_7199998 Show fit | 10.26 |
ENSDART00000167316
|
|
|
chr11_+_36989696 Show fit | 9.76 |
ENSDART00000045888
|
transketolase a |
|
chr19_+_42219165 Show fit | 8.93 |
ENSDART00000163192
|
|
|
chr7_+_13382852 Show fit | 8.27 |
ENSDART00000166318
|
diacylglycerol lipase, alpha |
|
chr18_-_22753637 Show fit | 7.97 |
ENSDART00000181589
ENSDART00000009912 |
heat shock transcription factor 4 |
|
chr9_-_35557397 Show fit | 7.50 |
ENSDART00000100681
|
neural cell adhesion molecule 2 |
|
chr6_+_2174082 Show fit | 7.40 |
ENSDART00000073936
|
activin A receptor type 1Bb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.0 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.1 | 11.8 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 10.1 | GO:0048841 | regulation of axon extension involved in axon guidance(GO:0048841) |
2.0 | 9.8 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
2.1 | 8.3 | GO:0071926 | endocannabinoid signaling pathway(GO:0071926) retrograde trans-synaptic signaling by lipid(GO:0098920) retrograde trans-synaptic signaling by endocannabinoid(GO:0098921) |
2.6 | 7.8 | GO:1902746 | regulation of lens fiber cell differentiation(GO:1902746) |
0.2 | 7.4 | GO:0032924 | activin receptor signaling pathway(GO:0032924) |
1.7 | 7.0 | GO:0006867 | asparagine transport(GO:0006867) |
0.2 | 6.5 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
1.1 | 6.4 | GO:0006086 | acetyl-CoA biosynthetic process from pyruvate(GO:0006086) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 14.3 | GO:0043005 | neuron projection(GO:0043005) |
0.3 | 13.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.5 | 10.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.1 | 8.7 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.2 | 8.3 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 8.2 | GO:0016459 | myosin complex(GO:0016459) |
0.6 | 7.9 | GO:0048179 | activin receptor complex(GO:0048179) |
0.0 | 6.8 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.2 | 6.7 | GO:0043679 | axon terminus(GO:0043679) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.7 | GO:0051015 | actin filament binding(GO:0051015) |
2.5 | 12.5 | GO:0070573 | metallodipeptidase activity(GO:0070573) |
0.0 | 12.4 | GO:0008017 | microtubule binding(GO:0008017) |
1.9 | 11.6 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
0.0 | 10.3 | GO:0005509 | calcium ion binding(GO:0005509) |
1.2 | 9.4 | GO:0008048 | calcium sensitive guanylate cyclase activator activity(GO:0008048) |
0.1 | 9.1 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.8 | 8.3 | GO:0004465 | lipoprotein lipase activity(GO:0004465) |
0.2 | 8.2 | GO:0005546 | phosphatidylinositol-4,5-bisphosphate binding(GO:0005546) |
1.3 | 7.6 | GO:0016361 | activin receptor activity, type I(GO:0016361) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.2 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.2 | 4.5 | PID IFNG PATHWAY | IFN-gamma pathway |
0.1 | 2.4 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 2.1 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.2 | 2.0 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 1.9 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 1.6 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 1.5 | PID IGF1 PATHWAY | IGF1 pathway |
0.1 | 1.5 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 1.2 | PID CXCR3 PATHWAY | CXCR3-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 8.3 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.4 | 4.6 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.1 | 4.5 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 4.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.3 | 4.1 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.4 | 3.6 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.4 | 3.6 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.6 | 3.5 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.1 | 3.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 3.4 | REACTOME GLUCAGON TYPE LIGAND RECEPTORS | Genes involved in Glucagon-type ligand receptors |