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PRJEB1986: zebrafish developmental stages transcriptome

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Results for gbx2

Z-value: 0.34

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Transcription factors associated with gbx2

Gene Symbol Gene ID Gene Info
gbx2
ENSDARG00000002933 gastrulation brain homeobox 2
gbx2
ENSDARG00000116377 gastrulation brain homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
gbx2dr11_v1_chr6_+_16031189_160311890.165.2e-01Click!

Activity profile of gbx2 motif

Sorted Z-values of gbx2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr14_-_14643190 0.57 ENSDART00000167119
znf185
zinc finger protein 185 with LIM domain
chr5_-_25733745 0.45 ENSDART00000051566
zgc:101016
zgc:101016
chr23_+_42254960 0.45 ENSDART00000102980
zcchc11
zinc finger, CCHC domain containing 11
chr22_+_9862243 0.43 ENSDART00000105942
si:dkey-253d23.3
si:dkey-253d23.3
chr6_+_3717613 0.42 ENSDART00000184330
ssb
Sjogren syndrome antigen B (autoantigen La)
chr19_+_21820144 0.41 ENSDART00000181996
CU856623.1

chr8_+_23826985 0.41 ENSDART00000187430
mapk14a
mitogen-activated protein kinase 14a
chr17_+_1496107 0.40 ENSDART00000187804
LO018430.1

chr22_+_9862466 0.38 ENSDART00000146864
si:dkey-253d23.3
si:dkey-253d23.3
chr10_+_43797130 0.38 ENSDART00000027242
nr2f1b
nuclear receptor subfamily 2, group F, member 1b
chr15_-_10341048 0.35 ENSDART00000171013
tenm4
teneurin transmembrane protein 4
chr2_-_26720854 0.35 ENSDART00000148110
si:dkey-181m9.8
si:dkey-181m9.8
chr16_-_7379328 0.34 ENSDART00000060447
med18
mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
chr22_+_2417105 0.32 ENSDART00000106415
zgc:113220
zgc:113220
chr16_+_54875530 0.32 ENSDART00000149795
nr0b2a
nuclear receptor subfamily 0, group B, member 2a
chr18_+_17537344 0.32 ENSDART00000025782
nup93
nucleoporin 93
chr16_+_5678071 0.31 ENSDART00000011166
ENSDART00000134198
ENSDART00000131575
zgc:158689
zgc:158689
chr17_+_10593398 0.30 ENSDART00000168897
ENSDART00000193989
ENSDART00000191664
ENSDART00000167188
mapkbp1
mitogen-activated protein kinase binding protein 1
chr11_+_31323746 0.30 ENSDART00000180220
ENSDART00000189937
sipa1l2
signal-induced proliferation-associated 1 like 2
chr15_-_16177603 0.30 ENSDART00000156352
si:ch211-259g3.4
si:ch211-259g3.4
chr9_-_30555725 0.29 ENSDART00000079222
chaf1b
chromatin assembly factor 1, subunit B
chr3_+_28581397 0.29 ENSDART00000150893
sept12
septin 12
chr7_-_33684632 0.28 ENSDART00000130553
tle3b
transducin-like enhancer of split 3b
chr24_-_26995164 0.27 ENSDART00000142864
stag1b
stromal antigen 1b
chr24_-_20359350 0.27 ENSDART00000109223
dlec1
deleted in lung and esophageal cancer 1
chr16_+_27593698 0.26 ENSDART00000145203
si:ch211-197h24.8
si:ch211-197h24.8
chr20_+_18741089 0.26 ENSDART00000183218
fam167ab
family with sequence similarity 167, member Ab
chr7_+_20260172 0.25 ENSDART00000012450
dvl2
dishevelled segment polarity protein 2
chr16_+_16968682 0.25 ENSDART00000111074
si:ch211-120k19.1
si:ch211-120k19.1
chr7_+_46019780 0.25 ENSDART00000163991
ccne1
cyclin E1
chr13_-_330004 0.24 ENSDART00000093149
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21
chr17_+_24318753 0.24 ENSDART00000064083
otx1
orthodenticle homeobox 1
chr22_-_9861531 0.24 ENSDART00000193197
si:dkey-253d23.2
si:dkey-253d23.2
chr18_+_7639401 0.23 ENSDART00000092416
rabl2
RAB, member of RAS oncogene family-like 2
chr15_-_45110011 0.23 ENSDART00000182047
ENSDART00000188662
CABZ01072607.1

chr21_-_40348790 0.22 ENSDART00000178123
CR847523.1

chr24_+_38301080 0.22 ENSDART00000105672
mybpc2b
myosin binding protein C, fast type b
chr22_+_2512154 0.21 ENSDART00000097363
zgc:173726
zgc:173726
chr12_-_34713690 0.20 ENSDART00000180807
bahcc1b
BAH domain and coiled-coil containing 1b
chr16_+_16969060 0.20 ENSDART00000182819
ENSDART00000191876
si:ch211-120k19.1
rpl18
si:ch211-120k19.1
ribosomal protein L18
chr22_-_14272699 0.19 ENSDART00000190121
si:ch211-246m6.5
si:ch211-246m6.5
chr12_-_35386910 0.18 ENSDART00000153453
camk2g1
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1
chr6_-_42369186 0.18 ENSDART00000039868
usp4
ubiquitin specific peptidase 4 (proto-oncogene)
chr12_+_5977777 0.18 ENSDART00000152302
si:ch211-131k2.2
si:ch211-131k2.2
chr10_-_1788376 0.18 ENSDART00000123842
epb41l4a
erythrocyte membrane protein band 4.1 like 4A
chr23_-_30727596 0.17 ENSDART00000060193
thap3
THAP domain containing, apoptosis associated protein 3
chr5_+_27897504 0.17 ENSDART00000130936
adam28
ADAM metallopeptidase domain 28
chr18_-_15932704 0.16 ENSDART00000127769
plekhg7
pleckstrin homology domain containing, family G (with RhoGef domain) member 7
chr7_-_46019756 0.16 ENSDART00000162583
zgc:162297
zgc:162297
chr12_+_22560067 0.16 ENSDART00000172066
polr2a
polymerase (RNA) II (DNA directed) polypeptide A
chr3_-_26921475 0.16 ENSDART00000130281
ciita
class II, major histocompatibility complex, transactivator
chr9_-_3934963 0.15 ENSDART00000062336
ubr3
ubiquitin protein ligase E3 component n-recognin 3
chr11_+_24340166 0.15 ENSDART00000188719
rbm39a
RNA binding motif protein 39a
chr8_+_21229718 0.15 ENSDART00000100222
cry1ba
cryptochrome circadian clock 1ba
chr7_+_53755054 0.15 ENSDART00000181629
neo1a
neogenin 1a
chr5_-_7834582 0.15 ENSDART00000162626
ENSDART00000157661
pdlim5a
PDZ and LIM domain 5a
chr18_+_26895994 0.15 ENSDART00000098347
ch25hl1.2
cholesterol 25-hydroxylase like 1, tandem duplicate 2
chr10_-_43113731 0.14 ENSDART00000138099
tmem167a
transmembrane protein 167A
chr9_+_23003208 0.14 ENSDART00000021060
eaf2
ELL associated factor 2
chr7_+_59677273 0.14 ENSDART00000039535
ENSDART00000132044
trmt44
tRNA methyltransferase 44 homolog
chr23_-_333457 0.13 ENSDART00000114486
uhrf1bp1
UHRF1 binding protein 1
chr16_-_26855936 0.13 ENSDART00000167320
ENSDART00000078119
ino80c
INO80 complex subunit C
chr22_-_36530902 0.13 ENSDART00000056188
polr2h
info polymerase (RNA) II (DNA directed) polypeptide H
chr24_-_16904234 0.12 ENSDART00000192879
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
chr24_-_33801668 0.12 ENSDART00000079202
abcb8
ATP-binding cassette, sub-family B (MDR/TAP), member 8
chr11_+_6819050 0.12 ENSDART00000104289
rab3ab
RAB3A, member RAS oncogene family, b
chr23_+_44349252 0.12 ENSDART00000097644
ephb4b
eph receptor B4b
chr19_-_27336092 0.12 ENSDART00000176885
gtf2h4
general transcription factor IIH, polypeptide 4
chr10_-_14929630 0.12 ENSDART00000121892
ENSDART00000044756
ENSDART00000128579
ENSDART00000147653
smad2
SMAD family member 2
chr8_+_23105117 0.11 ENSDART00000025171
ythdf1
YTH N(6)-methyladenosine RNA binding protein 1
chr8_+_20140321 0.11 ENSDART00000012120
acsbg2
acyl-CoA synthetase bubblegum family member 2
chr3_-_21037840 0.11 ENSDART00000002393
rundc3aa
RUN domain containing 3Aa
chr10_-_11761927 0.10 ENSDART00000138748
adamts6
ADAM metallopeptidase with thrombospondin type 1 motif, 6
chr14_-_33351103 0.10 ENSDART00000010019
upf3b
UPF3B, regulator of nonsense mediated mRNA decay
chr11_-_12158412 0.10 ENSDART00000147670
npepps
aminopeptidase puromycin sensitive
chr19_-_10330778 0.09 ENSDART00000081465
ENSDART00000136653
ENSDART00000171232
ccdc106b
coiled-coil domain containing 106b
chr16_-_35579200 0.09 ENSDART00000162172
scmh1
Scm polycomb group protein homolog 1
chr8_+_18010568 0.08 ENSDART00000121984
ssbp3b
single stranded DNA binding protein 3b
chr18_+_16750080 0.08 ENSDART00000136320
rnf141
ring finger protein 141
chr22_-_619711 0.08 ENSDART00000192778
srsf3b
serine/arginine-rich splicing factor 3b
chr5_-_69923241 0.08 ENSDART00000187389
fktn
fukutin
chr20_-_49889111 0.08 ENSDART00000058858
kif13bb
kinesin family member 13Bb
chr19_-_15855427 0.07 ENSDART00000133059
cited4a
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a
chr19_-_20430892 0.07 ENSDART00000111409
tbc1d5
TBC1 domain family, member 5
chr11_-_2632747 0.07 ENSDART00000008133
si:ch211-160o17.2
si:ch211-160o17.2
chr13_-_33654931 0.07 ENSDART00000020350
snx5
sorting nexin 5
chr18_-_16937008 0.06 ENSDART00000100117
ENSDART00000022640
ENSDART00000136541
znf143b
zinc finger protein 143b
chr10_-_39052264 0.06 ENSDART00000144036
igsf5a
immunoglobulin superfamily, member 5a
chr5_+_57773222 0.06 ENSDART00000135344
ppp2r1ba
protein phosphatase 2, regulatory subunit A, beta a
chr4_-_5018705 0.05 ENSDART00000154025
strip2
striatin interacting protein 2
chr9_-_9671244 0.05 ENSDART00000018228
gsk3b
glycogen synthase kinase 3 beta
chr2_+_41926707 0.04 ENSDART00000023208
zgc:110183
zgc:110183
chr9_+_55154414 0.04 ENSDART00000182924
ANOS1
anosmin 1
chr6_+_9191981 0.03 ENSDART00000150916
zgc:112392
zgc:112392
chr14_+_35464994 0.03 ENSDART00000115307
si:ch211-203d1.3
si:ch211-203d1.3
chr13_+_733027 0.03 ENSDART00000149547
nrxn1b
neurexin 1b
chr3_-_10739625 0.03 ENSDART00000156144
zgc:112965
zgc:112965
chr25_-_31702970 0.02 ENSDART00000153586
lamb4
laminin, beta 4
chr11_+_16216909 0.02 ENSDART00000081035
ENSDART00000147190
slc25a26
solute carrier family 25 (S-adenosylmethionine carrier), member 26
chr12_-_20665164 0.02 ENSDART00000105352
gip
gastric inhibitory polypeptide
chr17_+_49281597 0.01 ENSDART00000155599
zgc:113176
zgc:113176
chr8_-_25729542 0.01 ENSDART00000078149
ENSDART00000085779
foxp3a
forkhead box P3a
chr8_+_44478294 0.00 ENSDART00000006898
si:ch73-211l2.3
si:ch73-211l2.3
chr15_+_34934568 0.00 ENSDART00000165210
zgc:66024
zgc:66024

Network of associatons between targets according to the STRING database.

First level regulatory network of gbx2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0032289 central nervous system myelin formation(GO:0032289)
0.1 0.3 GO:0051292 nuclear pore complex assembly(GO:0051292)
0.1 0.4 GO:0040016 embryonic cleavage(GO:0040016) positive regulation of myoblast fusion(GO:1901741)
0.0 0.3 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.2 GO:0007217 tachykinin receptor signaling pathway(GO:0007217)
0.0 0.1 GO:0031630 regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031630)
0.0 0.3 GO:0042249 establishment of planar polarity of embryonic epithelium(GO:0042249) establishment of planar polarity involved in neural tube closure(GO:0090177) regulation of establishment of planar polarity involved in neural tube closure(GO:0090178) planar cell polarity pathway involved in neural tube closure(GO:0090179)
0.0 0.3 GO:2000251 positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.0 0.2 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0 0.1 GO:0060282 positive regulation of oocyte development(GO:0060282)
0.0 0.1 GO:0010752 regulation of cGMP-mediated signaling(GO:0010752)
0.0 0.1 GO:0060049 regulation of protein glycosylation(GO:0060049)
0.0 0.4 GO:0035476 angioblast cell migration(GO:0035476)
0.0 0.3 GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity(GO:0043433)
0.0 0.2 GO:0003406 retinal pigment epithelium development(GO:0003406)
0.0 0.2 GO:0034122 negative regulation of toll-like receptor signaling pathway(GO:0034122)
0.0 0.1 GO:0072386 plus-end-directed vesicle transport along microtubule(GO:0072383) plus-end-directed organelle transport along microtubule(GO:0072386)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0033186 CAF-1 complex(GO:0033186)
0.1 0.2 GO:0097134 cyclin E1-CDK2 complex(GO:0097134)
0.0 0.3 GO:0070847 core mediator complex(GO:0070847)
0.0 0.3 GO:0071797 LUBAC complex(GO:0071797)
0.0 0.3 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.1 GO:0032783 ELL-EAF complex(GO:0032783)
0.0 0.1 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.3 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.3 GO:0008278 cohesin complex(GO:0008278)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0016300 tRNA (uracil) methyltransferase activity(GO:0016300)
0.0 0.1 GO:0030586 [methionine synthase] reductase activity(GO:0030586)
0.0 0.1 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.0 0.1 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.1 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.0 0.4 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.3 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0016312 inositol bisphosphate phosphatase activity(GO:0016312)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID WNT CANONICAL PATHWAY Canonical Wnt signaling pathway
0.0 0.2 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 REACTOME RNA POL III TRANSCRIPTION TERMINATION Genes involved in RNA Polymerase III Transcription Termination
0.0 0.2 REACTOME VIRAL MESSENGER RNA SYNTHESIS Genes involved in Viral Messenger RNA Synthesis
0.0 0.3 REACTOME SIGNALING BY HIPPO Genes involved in Signaling by Hippo
0.0 0.1 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL