PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gcm2 | dr11_v1_chr24_-_8831866_8831912 | -0.71 | 6.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_43056153 Show fit | 2.90 |
ENSDART00000186377
|
prion protein a |
|
chr17_+_45305645 Show fit | 2.66 |
ENSDART00000172488
|
calpain 3a, (p94) |
|
chr19_-_8604429 Show fit | 1.97 |
ENSDART00000151165
|
tripartite motif containing 46b |
|
chr24_+_39614853 Show fit | 1.80 |
ENSDART00000165138
|
|
|
chr24_-_6158933 Show fit | 1.56 |
ENSDART00000021609
|
glutamate decarboxylase 2 |
|
chr16_+_25407021 Show fit | 1.54 |
ENSDART00000187489
ENSDART00000086333 |
jumonji, AT rich interactive domain 2a |
|
chr23_-_30960506 Show fit | 1.50 |
ENSDART00000142661
|
oxysterol binding protein-like 2a |
|
chr13_-_44285793 Show fit | 1.48 |
ENSDART00000167383
|
|
|
chr10_+_7182423 Show fit | 1.43 |
ENSDART00000186788
|
pleckstrin and Sec7 domain containing 3, like |
|
chr21_-_1799265 Show fit | 1.41 |
ENSDART00000066623
|
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | GO:0032012 | ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012) |
0.0 | 2.7 | GO:0045214 | sarcomere organization(GO:0045214) |
0.0 | 2.6 | GO:0006338 | chromatin remodeling(GO:0006338) |
0.5 | 1.6 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.2 | 1.4 | GO:0046716 | muscle cell cellular homeostasis(GO:0046716) |
0.3 | 1.3 | GO:0031571 | mitotic G1 DNA damage checkpoint(GO:0031571) |
0.1 | 1.2 | GO:1905066 | regulation of canonical Wnt signaling pathway involved in heart development(GO:1905066) |
0.2 | 1.1 | GO:0048903 | anterior lateral line neuromast hair cell differentiation(GO:0048903) |
0.0 | 1.1 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.1 | 1.0 | GO:0070782 | phosphatidylserine exposure on apoptotic cell surface(GO:0070782) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | GO:0032587 | ruffle membrane(GO:0032587) |
0.0 | 1.4 | GO:0042383 | sarcolemma(GO:0042383) |
0.0 | 1.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 1.1 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 1.0 | GO:0016586 | RSC complex(GO:0016586) |
0.0 | 1.0 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.0 | 0.9 | GO:0030496 | midbody(GO:0030496) |
0.1 | 0.7 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 0.7 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.0 | 0.6 | GO:0071565 | nBAF complex(GO:0071565) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.9 | GO:0004784 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.1 | 2.7 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.0 | 2.1 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.1 | 1.7 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.5 | 1.6 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.2 | 1.5 | GO:0034647 | histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647) |
0.1 | 1.5 | GO:0015248 | sterol transporter activity(GO:0015248) |
0.2 | 1.4 | GO:0003828 | alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828) |
0.1 | 1.2 | GO:0030332 | cyclin binding(GO:0030332) |
0.1 | 1.2 | GO:0050291 | sphingosine N-acyltransferase activity(GO:0050291) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.8 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.8 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 0.7 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.6 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 0.5 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
0.0 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.1 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 1.4 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.0 | 1.0 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 0.8 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
0.0 | 0.6 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.4 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 0.4 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |