PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000020746 | growth factor independent 1A transcription repressor a | |
ENSDARG00000044457 | growth factor independent 1A transcription repressor b | |
ENSDARG00000114140 | growth factor independent 1A transcription repressor b |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gfi1aa | dr11_v1_chr2_+_10771787_10771787 | -0.33 | 1.7e-01 | Click! |
gfi1ab | dr11_v1_chr6_-_29007493_29007493 | -0.07 | 7.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_54013457 Show fit | 1.09 |
ENSDART00000012104
ENSDART00000126339 |
deltaA |
|
chr23_-_21471022 Show fit | 1.07 |
ENSDART00000104206
|
hairy-related 4, tandem duplicate 2 |
|
chr3_-_1400309 Show fit | 1.06 |
ENSDART00000159893
|
WW domain binding protein 11 |
|
chr16_+_20915319 Show fit | 1.05 |
ENSDART00000079383
|
homeobox A9b |
|
chr11_-_10456553 Show fit | 1.00 |
ENSDART00000169509
ENSDART00000185574 ENSDART00000188276 |
epithelial cell transforming 2 |
|
chr12_+_27127139 Show fit | 1.00 |
ENSDART00000025966
|
homeobox B6b |
|
chr23_+_21459263 Show fit | 0.93 |
ENSDART00000104209
|
hairy-related 4, tandem duplicate 3 |
|
chr5_-_54714789 Show fit | 0.92 |
ENSDART00000063357
|
cyclin B1 |
|
chr11_-_10456387 Show fit | 0.89 |
ENSDART00000011087
ENSDART00000081827 |
epithelial cell transforming 2 |
|
chr9_-_18877597 Show fit | 0.89 |
ENSDART00000099446
|
potassium channel tetramerization domain containing 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | GO:0048936 | peripheral nervous system neuron axonogenesis(GO:0048936) |
0.2 | 2.5 | GO:0044837 | assembly of actomyosin apparatus involved in cytokinesis(GO:0000912) actomyosin contractile ring assembly(GO:0000915) actomyosin contractile ring organization(GO:0044837) |
0.3 | 2.3 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.3 | 2.1 | GO:0035881 | amacrine cell differentiation(GO:0035881) |
0.1 | 2.0 | GO:0039014 | pronephric nephron tubule epithelial cell differentiation(GO:0035778) cell differentiation involved in pronephros development(GO:0039014) nephron tubule epithelial cell differentiation(GO:0072160) |
0.3 | 1.8 | GO:0055016 | hypochord development(GO:0055016) |
0.2 | 1.7 | GO:2000290 | smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290) |
0.2 | 1.7 | GO:0009954 | proximal/distal pattern formation(GO:0009954) |
0.1 | 1.4 | GO:0001966 | thigmotaxis(GO:0001966) |
0.0 | 1.4 | GO:0070121 | Kupffer's vesicle development(GO:0070121) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 2.3 | GO:0097125 | cyclin B1-CDK1 complex(GO:0097125) |
0.0 | 1.9 | GO:0005795 | Golgi stack(GO:0005795) |
0.0 | 1.5 | GO:0030175 | filopodium(GO:0030175) |
0.0 | 1.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 1.3 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 1.1 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 1.0 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.0 | 1.0 | GO:0034707 | chloride channel complex(GO:0034707) |
0.0 | 0.9 | GO:0071141 | SMAD protein complex(GO:0071141) |
0.0 | 0.9 | GO:0030027 | lamellipodium(GO:0030027) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 19.2 | GO:0001159 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.0 | 2.8 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
0.1 | 1.8 | GO:0008449 | N-acetylglucosamine-6-sulfatase activity(GO:0008449) |
0.1 | 1.1 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.0 | 1.1 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 1.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 1.0 | GO:0003678 | DNA helicase activity(GO:0003678) |
0.2 | 0.9 | GO:0005173 | stem cell factor receptor binding(GO:0005173) |
0.1 | 0.9 | GO:0004157 | dihydropyrimidinase activity(GO:0004157) |
0.1 | 0.9 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.6 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.3 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.2 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 1.1 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 0.8 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.7 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.6 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.7 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.0 | 1.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 1.3 | REACTOME SCF BETA TRCP MEDIATED DEGRADATION OF EMI1 | Genes involved in SCF-beta-TrCP mediated degradation of Emi1 |
0.0 | 1.3 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.7 | REACTOME CHONDROITIN SULFATE BIOSYNTHESIS | Genes involved in Chondroitin sulfate biosynthesis |
0.0 | 0.7 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.1 | 0.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.6 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 0.6 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |