PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gfi1b | dr11_v1_chr21_-_17296789_17296789 | -0.45 | 5.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_32541033 Show fit | 0.80 |
ENSDART00000151476
ENSDART00000055324 |
reticulocalbin 3, EF-hand calcium binding domain |
|
chr23_-_35694461 Show fit | 0.78 |
ENSDART00000185884
|
tubulin, alpha 1c |
|
chr25_+_19999623 Show fit | 0.69 |
ENSDART00000026401
|
zgc:194665 |
|
chr20_-_26042070 Show fit | 0.55 |
ENSDART00000140255
|
si:dkey-12h9.6 |
|
chr17_+_15433671 Show fit | 0.55 |
ENSDART00000149568
|
fatty acid binding protein 7, brain, a |
|
chr23_-_35694171 Show fit | 0.55 |
ENSDART00000077539
|
tubulin, alpha 1c |
|
chr17_+_15433518 Show fit | 0.49 |
ENSDART00000026180
|
fatty acid binding protein 7, brain, a |
|
chr19_+_42609132 Show fit | 0.47 |
ENSDART00000010104
|
cartilage associated protein |
|
chr5_-_40734045 Show fit | 0.46 |
ENSDART00000010896
|
ISL LIM homeobox 1 |
|
chr9_+_30108641 Show fit | 0.45 |
ENSDART00000060174
|
jagunal homolog 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.6 | GO:0023041 | neuronal signal transduction(GO:0023041) |
0.0 | 0.6 | GO:0015986 | energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986) |
0.0 | 0.6 | GO:0009648 | photoperiodism(GO:0009648) |
0.2 | 0.5 | GO:0038158 | granulocyte colony-stimulating factor signaling pathway(GO:0038158) |
0.0 | 0.5 | GO:0019511 | peptidyl-proline hydroxylation(GO:0019511) |
0.1 | 0.4 | GO:0048341 | paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341) |
0.1 | 0.4 | GO:0098535 | de novo centriole assembly(GO:0098535) |
0.1 | 0.4 | GO:0034653 | diterpenoid catabolic process(GO:0016103) terpenoid catabolic process(GO:0016115) retinoic acid catabolic process(GO:0034653) |
0.1 | 0.4 | GO:0050848 | regulation of calcium-mediated signaling(GO:0050848) |
0.0 | 0.4 | GO:0035108 | limb morphogenesis(GO:0035108) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | GO:0034751 | aryl hydrocarbon receptor complex(GO:0034751) |
0.0 | 0.6 | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276) |
0.0 | 0.6 | GO:0030867 | rough endoplasmic reticulum membrane(GO:0030867) |
0.0 | 0.3 | GO:0032391 | photoreceptor connecting cilium(GO:0032391) |
0.0 | 0.3 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.1 | 0.2 | GO:0042382 | paraspeckles(GO:0042382) |
0.1 | 0.2 | GO:0043291 | RAVE complex(GO:0043291) |
0.0 | 0.2 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 0.2 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 0.2 | GO:0044545 | NSL complex(GO:0044545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.1 | 1.0 | GO:0005504 | fatty acid binding(GO:0005504) |
0.0 | 0.5 | GO:0005518 | collagen binding(GO:0005518) |
0.1 | 0.4 | GO:0004966 | galanin receptor activity(GO:0004966) |
0.0 | 0.4 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.1 | 0.3 | GO:0051377 | mannose-ethanolamine phosphotransferase activity(GO:0051377) |
0.0 | 0.3 | GO:0016868 | intramolecular transferase activity, phosphotransferases(GO:0016868) |
0.0 | 0.3 | GO:0070403 | NAD+ binding(GO:0070403) |
0.1 | 0.2 | GO:0061598 | molybdopterin adenylyltransferase activity(GO:0061598) molybdopterin molybdotransferase activity(GO:0061599) |
0.0 | 0.2 | GO:0035256 | G-protein coupled glutamate receptor binding(GO:0035256) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | PID LKB1 PATHWAY | LKB1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 0.5 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
0.0 | 0.4 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
0.0 | 0.3 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.0 | 0.3 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.2 | REACTOME ERKS ARE INACTIVATED | Genes involved in ERKs are inactivated |
0.0 | 0.2 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |
0.0 | 0.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.0 | 0.1 | REACTOME RAP1 SIGNALLING | Genes involved in Rap1 signalling |