PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gli1 | dr11_v1_chr6_-_59505589_59505589 | -0.61 | 5.4e-03 | Click! |
gli2b | dr11_v1_chr11_+_43661735_43661735 | -0.61 | 5.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_464007 Show fit | 3.58 |
ENSDART00000106669
|
dehydrogenase/reductase (SDR family) member 7Cb |
|
chr20_+_35484070 Show fit | 3.21 |
ENSDART00000026234
ENSDART00000141675 |
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2 |
|
chr12_-_4756478 Show fit | 3.09 |
ENSDART00000152181
|
microtubule-associated protein tau a |
|
chr4_-_8040436 Show fit | 2.72 |
ENSDART00000113033
|
si:ch211-240l19.6 |
|
chr9_-_46399611 Show fit | 2.57 |
ENSDART00000164914
ENSDART00000145931 |
lactase si:dkey-79p17.3 |
|
chr24_-_6158933 Show fit | 2.49 |
ENSDART00000021609
|
glutamate decarboxylase 2 |
|
chr20_-_25518488 Show fit | 2.38 |
ENSDART00000186993
|
cytochrome P450, family 2, subfamily N, polypeptide 13 |
|
chr14_+_15155684 Show fit | 2.37 |
ENSDART00000167966
|
zgc:158852 |
|
chr21_-_41873065 Show fit | 2.31 |
ENSDART00000014538
|
endonuclease, polyU-specific 2 |
|
chr6_+_42918933 Show fit | 2.31 |
ENSDART00000064896
|
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.1 | 2.6 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.8 | 2.5 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.0 | 2.5 | GO:0061515 | myeloid cell development(GO:0061515) |
0.2 | 2.3 | GO:0035588 | adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588) |
0.0 | 1.9 | GO:0045766 | positive regulation of angiogenesis(GO:0045766) |
0.2 | 1.8 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
0.1 | 1.8 | GO:0001867 | complement activation, lectin pathway(GO:0001867) |
0.2 | 1.7 | GO:0048280 | vesicle fusion with Golgi apparatus(GO:0048280) |
0.2 | 1.7 | GO:0006735 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | GO:0005884 | actin filament(GO:0005884) |
0.0 | 2.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 2.1 | GO:0014069 | postsynaptic density(GO:0014069) |
0.1 | 1.9 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 1.8 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.2 | 1.7 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.0 | 1.7 | GO:0012507 | ER to Golgi transport vesicle membrane(GO:0012507) |
0.0 | 1.7 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 1.4 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 1.2 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 3.8 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.0 | 2.7 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.2 | 2.6 | GO:0008422 | beta-glucosidase activity(GO:0008422) |
0.8 | 2.5 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.0 | 2.5 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 2.5 | GO:0019905 | syntaxin binding(GO:0019905) |
0.1 | 2.3 | GO:0031683 | G-protein beta/gamma-subunit complex binding(GO:0031683) |
0.0 | 2.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.8 | GO:0003823 | antigen binding(GO:0003823) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 2.1 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.1 | 1.7 | PID EPHRINB REV PATHWAY | Ephrin B reverse signaling |
0.0 | 1.4 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 0.9 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.3 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 2.8 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.4 | 2.6 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.2 | 2.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 2.3 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.1 | 1.0 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
0.0 | 0.9 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 0.9 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.0 | 0.8 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.0 | 0.7 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |