PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gli2a | dr11_v1_chr9_+_37141836_37141836 | -0.87 | 1.7e-06 | Click! |
gli3 | dr11_v1_chr24_-_11821505_11821505 | -0.80 | 4.1e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_+_3252950 Show fit | 5.60 |
ENSDART00000020671
|
peripherin 2b (retinal degeneration, slow) |
|
chr16_+_52512025 Show fit | 4.00 |
ENSDART00000056095
|
fatty acid binding protein 10a, liver basic |
|
chr10_-_22854758 Show fit | 3.16 |
ENSDART00000079449
|
actinodin3 |
|
chr5_+_51594209 Show fit | 2.24 |
ENSDART00000164668
ENSDART00000058403 ENSDART00000055857 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr6_-_35446110 Show fit | 2.23 |
ENSDART00000058773
|
regulator of G protein signaling 16 |
|
chr13_+_3954540 Show fit | 2.01 |
ENSDART00000092646
|
leucine rich repeat containing 73 |
|
chr21_+_10739846 Show fit | 1.95 |
ENSDART00000084011
|
complexin 4a |
|
chr19_-_40192249 Show fit | 1.95 |
ENSDART00000051972
|
granulin 1 |
|
chr2_+_51783120 Show fit | 1.94 |
ENSDART00000177559
|
crystallin, gamma N1 |
|
chr23_-_27875140 Show fit | 1.85 |
ENSDART00000143662
|
ankyrin repeat domain 33Aa |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.2 | GO:0007601 | visual perception(GO:0007601) |
0.1 | 2.5 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
0.2 | 2.2 | GO:1904071 | presynaptic active zone assembly(GO:1904071) |
0.2 | 2.2 | GO:0046314 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.2 | 1.5 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
0.1 | 1.5 | GO:0045773 | positive regulation of axon extension(GO:0045773) |
0.0 | 1.4 | GO:0042737 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.0 | 1.4 | GO:0014904 | myotube cell development(GO:0014904) skeletal muscle fiber development(GO:0048741) |
0.4 | 1.3 | GO:1904059 | regulation of locomotor rhythm(GO:1904059) |
0.1 | 1.3 | GO:0014823 | response to activity(GO:0014823) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.2 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.1 | 2.0 | GO:0043195 | terminal bouton(GO:0043195) |
0.1 | 1.6 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 1.5 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.1 | 1.4 | GO:0045277 | respiratory chain complex IV(GO:0045277) |
0.1 | 1.3 | GO:0034706 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.0 | 1.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.2 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 1.1 | GO:0016586 | RSC complex(GO:0016586) |
0.0 | 0.9 | GO:0005637 | nuclear inner membrane(GO:0005637) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 4.0 | GO:0032052 | bile acid binding(GO:0032052) |
0.0 | 2.6 | GO:0019905 | syntaxin binding(GO:0019905) |
0.2 | 2.2 | GO:0016775 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.1 | 2.2 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
0.0 | 1.8 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.3 | 1.6 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
0.1 | 1.4 | GO:0016676 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.0 | 1.4 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 1.3 | GO:0005248 | voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030) |
0.0 | 1.3 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 1.3 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 1.0 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.9 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.8 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.3 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 2.3 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.1 | 1.4 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.0 | 1.0 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.2 | 0.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.0 | 0.8 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.0 | 0.3 | REACTOME PECAM1 INTERACTIONS | Genes involved in PECAM1 interactions |
0.0 | 0.2 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |