PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
GMEB2 | dr11_v1_chr23_-_41824460_41824460 | -0.72 | 5.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_20195350 Show fit | 3.28 |
ENSDART00000139675
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr5_-_67365333 Show fit | 1.62 |
ENSDART00000133438
|
uracil DNA glycosylase a |
|
chr14_+_10625112 Show fit | 1.60 |
ENSDART00000143377
ENSDART00000136480 |
nucleoporin 62 like |
|
chr2_-_17114852 Show fit | 1.49 |
ENSDART00000006549
|
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) |
|
chr21_+_6397463 Show fit | 1.45 |
ENSDART00000136539
|
si:ch211-225g23.1 |
|
chr5_+_26138313 Show fit | 1.41 |
ENSDART00000010041
|
dihydrofolate reductase |
|
chr3_-_49382896 Show fit | 1.36 |
ENSDART00000169115
|
si:ch73-167f10.1 |
|
chr10_-_17484762 Show fit | 1.20 |
ENSDART00000137905
ENSDART00000007961 |
5'-nucleotidase, cytosolic II, like 1 |
|
chr16_+_40131473 Show fit | 1.12 |
ENSDART00000155421
ENSDART00000134732 ENSDART00000138699 |
centromere protein W si:ch211-195p4.4 |
|
chr11_-_36475124 Show fit | 1.12 |
ENSDART00000165203
|
ubiquitin specific peptidase 48 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.3 | GO:0006522 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.2 | 2.8 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.5 | 2.3 | GO:0097510 | base-excision repair, AP site formation via deaminated base removal(GO:0097510) |
0.1 | 2.0 | GO:0051382 | kinetochore assembly(GO:0051382) |
0.0 | 1.9 | GO:0030514 | negative regulation of BMP signaling pathway(GO:0030514) |
0.5 | 1.6 | GO:0045002 | double-strand break repair via single-strand annealing(GO:0045002) |
0.4 | 1.4 | GO:0046654 | tetrahydrofolate biosynthetic process(GO:0046654) |
0.0 | 1.2 | GO:0061640 | cytoskeleton-dependent cytokinesis(GO:0061640) |
0.2 | 0.9 | GO:0048103 | neuronal stem cell division(GO:0036445) somatic stem cell division(GO:0048103) |
0.1 | 0.9 | GO:0018057 | peptidyl-lysine oxidation(GO:0018057) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 2.1 | GO:0016607 | nuclear speck(GO:0016607) |
0.2 | 1.6 | GO:0044613 | nuclear pore central transport channel(GO:0044613) |
0.0 | 1.6 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 1.3 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
0.0 | 1.2 | GO:0031105 | septin ring(GO:0005940) septin complex(GO:0031105) septin cytoskeleton(GO:0032156) |
0.0 | 1.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.1 | 1.1 | GO:0016272 | prefoldin complex(GO:0016272) |
0.0 | 1.1 | GO:0000776 | kinetochore(GO:0000776) |
0.0 | 1.0 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.3 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.5 | 2.4 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.8 | 2.3 | GO:0043739 | G/U mismatch-specific uracil-DNA glycosylase activity(GO:0043739) |
0.0 | 2.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 1.8 | GO:0008408 | 3'-5' exonuclease activity(GO:0008408) |
0.1 | 1.6 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.5 | 1.4 | GO:0055105 | ubiquitin-protein transferase inhibitor activity(GO:0055105) |
0.1 | 1.4 | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646) |
0.0 | 1.3 | GO:0019843 | rRNA binding(GO:0019843) |
0.1 | 1.2 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 1.5 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 1.3 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.0 | 0.9 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.1 | 0.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.8 | PID FAS PATHWAY | FAS (CD95) signaling pathway |
0.0 | 0.7 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.0 | 0.2 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.2 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.2 | 1.5 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.0 | 1.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 1.1 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
0.0 | 1.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 0.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.1 | 0.8 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.1 | 0.8 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.0 | 0.7 | REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL | Genes involved in AKT phosphorylates targets in the cytosol |
0.0 | 0.7 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |