PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gsc | dr11_v1_chr17_-_19344999_19344999 | 0.71 | 6.7e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_54077740 Show fit | 14.28 |
ENSDART00000027000
|
rhodopsin |
|
chr17_-_51202339 Show fit | 8.70 |
ENSDART00000167117
|
si:ch1073-469d17.2 |
|
chr14_+_32838110 Show fit | 7.37 |
ENSDART00000158077
|
arrestin 3b, retinal (X-arrestin) |
|
chr6_+_41186320 Show fit | 7.24 |
ENSDART00000025241
|
opsin 1 (cone pigments), medium-wave-sensitive, 2 |
|
chr6_-_345503 Show fit | 6.48 |
ENSDART00000168901
|
phosphodiesterase 6H, cGMP-specific, cone, gamma, paralog a |
|
chr11_-_15090118 Show fit | 6.25 |
ENSDART00000171118
|
solute carrier family 1 (glutamate transporter), member 8a |
|
chr3_-_32170850 Show fit | 6.15 |
ENSDART00000055307
ENSDART00000157366 |
troponin T type 1 (skeletal, slow) |
|
chr11_-_15090564 Show fit | 5.55 |
ENSDART00000162079
|
solute carrier family 1 (glutamate transporter), member 8a |
|
chr14_+_32839535 Show fit | 5.22 |
ENSDART00000168975
|
arrestin 3b, retinal (X-arrestin) |
|
chr15_+_45640906 Show fit | 5.10 |
ENSDART00000149361
ENSDART00000149079 |
S-antigen; retina and pineal gland (arrestin) b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 22.7 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
4.8 | 14.3 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
0.3 | 13.3 | GO:0007602 | phototransduction(GO:0007602) |
0.1 | 10.6 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 8.4 | GO:0006904 | vesicle docking involved in exocytosis(GO:0006904) |
0.3 | 7.3 | GO:0007634 | optokinetic behavior(GO:0007634) |
1.1 | 6.5 | GO:0045745 | positive regulation of G-protein coupled receptor protein signaling pathway(GO:0045745) |
0.9 | 6.2 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.2 | 5.1 | GO:0045494 | photoreceptor cell maintenance(GO:0045494) |
0.0 | 5.1 | GO:0000226 | microtubule cytoskeleton organization(GO:0000226) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 18.1 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.9 | 13.6 | GO:0060170 | ciliary membrane(GO:0060170) |
0.6 | 9.7 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.1 | 8.5 | GO:0030141 | secretory granule(GO:0030141) |
0.9 | 6.5 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
0.1 | 6.2 | GO:0005861 | troponin complex(GO:0005861) |
0.3 | 4.1 | GO:0044295 | axonal growth cone(GO:0044295) |
0.3 | 3.8 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
0.0 | 3.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 3.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 22.7 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
4.8 | 14.3 | GO:0005502 | 11-cis retinal binding(GO:0005502) |
0.3 | 13.3 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 11.8 | GO:0015293 | symporter activity(GO:0015293) |
0.3 | 11.3 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.5 | 9.7 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.1 | 7.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.5 | 6.5 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
0.3 | 5.6 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.1 | 4.2 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 26.9 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.1 | 2.9 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.3 | 2.7 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.1 | 2.6 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 2.5 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.0 | 1.4 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 1.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.3 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.0 | 23.9 | REACTOME OPSINS | Genes involved in Opsins |
2.4 | 9.7 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.2 | 6.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
1.0 | 2.9 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.3 | 2.4 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.1 | 2.3 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 2.3 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.1 | 2.1 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 1.6 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 1.4 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |