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PRJEB1986: zebrafish developmental stages transcriptome

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Results for gsx1

Z-value: 0.58

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Transcription factors associated with gsx1

Gene Symbol Gene ID Gene Info
gsx1
ENSDARG00000035735 GS homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
gsx1dr11_v1_chr5_-_67911111_679111110.165.0e-01Click!

Activity profile of gsx1 motif

Sorted Z-values of gsx1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_+_30452945 1.70 ENSDART00000062303
foxd5
forkhead box D5
chr21_-_37973819 1.60 ENSDART00000133405
ripply1
ripply transcriptional repressor 1
chr25_+_14507567 1.55 ENSDART00000015681
dbx1b
developing brain homeobox 1b
chr8_-_50888806 1.47 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr18_+_619619 1.45 ENSDART00000159846
prtga
protogenin homolog a (Gallus gallus)
chr1_-_55248496 1.36 ENSDART00000098615
nanos3
nanos homolog 3
chr8_+_46641314 1.24 ENSDART00000113803
her3
hairy-related 3
chr2_+_20793982 1.23 ENSDART00000014785
prg4a
proteoglycan 4a
chr15_+_23799461 1.13 ENSDART00000154885
si:ch211-167j9.4
si:ch211-167j9.4
chr2_-_55298075 1.09 ENSDART00000186404
ENSDART00000149062
rab8a
RAB8A, member RAS oncogene family
chr17_+_8799451 1.05 ENSDART00000189814
ENSDART00000191577
tonsl
tonsoku-like, DNA repair protein
chr17_+_16046132 1.02 ENSDART00000155005
si:ch73-204p21.2
si:ch73-204p21.2
chr10_+_2799285 1.01 ENSDART00000030709
pnx
posterior neuron-specific homeobox
chr2_-_23768818 0.95 ENSDART00000148685
ENSDART00000191167
xirp1
xin actin binding repeat containing 1
chr9_-_32753535 0.94 ENSDART00000060006
olig2
oligodendrocyte lineage transcription factor 2
chr17_-_16422654 0.94 ENSDART00000150149
tdp1
tyrosyl-DNA phosphodiesterase 1
chr11_-_35171768 0.92 ENSDART00000192896
traip
TRAF-interacting protein
chr2_+_33326522 0.91 ENSDART00000056655
klf17
Kruppel-like factor 17
chr17_-_48944465 0.91 ENSDART00000154110
si:ch1073-80i24.3
si:ch1073-80i24.3
chr8_+_8936912 0.88 ENSDART00000135958
si:dkey-83k24.5
si:dkey-83k24.5
chr17_+_16046314 0.85 ENSDART00000154554
ENSDART00000154338
ENSDART00000155336
si:ch73-204p21.2
si:ch73-204p21.2
chr13_+_48359573 0.85 ENSDART00000161959
ENSDART00000165311
msh6
mutS homolog 6 (E. coli)
chr15_-_16177603 0.83 ENSDART00000156352
si:ch211-259g3.4
si:ch211-259g3.4
chr6_+_41191482 0.81 ENSDART00000000877
opn1mw3
opsin 1 (cone pigments), medium-wave-sensitive, 3
chr21_+_43404945 0.80 ENSDART00000142234
frmd7
FERM domain containing 7
chr3_+_53317040 0.80 ENSDART00000011780
xab2
XPA binding protein 2
chr3_-_30488063 0.80 ENSDART00000055393
ENSDART00000151367
med25
mediator complex subunit 25
chr8_+_23355484 0.78 ENSDART00000085361
ENSDART00000125729
dnmt3ba
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a
chr3_-_16719244 0.77 ENSDART00000055859
pold1
polymerase (DNA directed), delta 1, catalytic subunit
chr12_-_33770299 0.77 ENSDART00000189849
llgl2
lethal giant larvae homolog 2 (Drosophila)
chr5_+_27897504 0.76 ENSDART00000130936
adam28
ADAM metallopeptidase domain 28
chr2_-_10600950 0.74 ENSDART00000160216
BX323564.1

chr10_+_16036246 0.73 ENSDART00000141586
ENSDART00000135868
ENSDART00000065037
ENSDART00000124502
lmnb1
lamin B1
chr1_+_47178529 0.72 ENSDART00000158432
ENSDART00000074450
ENSDART00000137448
morc3b
MORC family CW-type zinc finger 3b
chr19_+_12406583 0.70 ENSDART00000013865
ENSDART00000151535
seh1l
SEH1-like (S. cerevisiae)
chr15_+_36309070 0.69 ENSDART00000157034
gmnc
geminin coiled-coil domain containing
chr21_+_34088110 0.69 ENSDART00000145123
ENSDART00000029599
ENSDART00000147519
mtmr1b
myotubularin related protein 1b
chr7_-_17816175 0.67 ENSDART00000091272
ENSDART00000173757
ecsit
ECSIT signalling integrator
chr14_-_21959712 0.67 ENSDART00000021417
p2rx3a
purinergic receptor P2X, ligand-gated ion channel, 3a
chr8_+_17168114 0.65 ENSDART00000183901
cenph
centromere protein H
chr10_+_8197827 0.65 ENSDART00000026244
mtrex
Mtr4 exosome RNA helicase
chr7_+_17816006 0.63 ENSDART00000080834
eml3
echinoderm microtubule associated protein like 3
chr10_-_21362320 0.62 ENSDART00000189789
avd
avidin
chr23_+_20705849 0.62 ENSDART00000079538
ccdc30
coiled-coil domain containing 30
chr22_-_36530902 0.62 ENSDART00000056188
polr2h
info polymerase (RNA) II (DNA directed) polypeptide H
chr24_+_19415124 0.61 ENSDART00000186931
sulf1
sulfatase 1
chr11_+_33818179 0.60 ENSDART00000109418
spoplb
speckle-type POZ protein-like b
chr10_-_21362071 0.60 ENSDART00000125167
avd
avidin
chr16_-_16761164 0.58 ENSDART00000135872
si:dkey-27n14.1
si:dkey-27n14.1
chr23_-_31913069 0.57 ENSDART00000135526
mtfr2
mitochondrial fission regulator 2
chr20_-_47188966 0.56 ENSDART00000152965
si:dkeyp-104f11.9
si:dkeyp-104f11.9
chr4_+_11723852 0.56 ENSDART00000028820
mkln1
muskelin 1, intracellular mediator containing kelch motifs
chr16_+_42471455 0.55 ENSDART00000166640
si:ch211-215k15.5
si:ch211-215k15.5
chr5_+_66433287 0.55 ENSDART00000170757
kntc1
kinetochore associated 1
chr8_-_18537866 0.55 ENSDART00000148802
ENSDART00000148962
ENSDART00000149506
nexn
nexilin (F actin binding protein)
chr19_+_30884706 0.54 ENSDART00000052126
yars
tyrosyl-tRNA synthetase
chr2_+_41526904 0.54 ENSDART00000127520
acvr1l
activin A receptor, type 1 like
chr23_+_1033668 0.53 ENSDART00000143391
si:zfos-905g2.1
si:zfos-905g2.1
chr14_-_33945692 0.53 ENSDART00000168546
ENSDART00000189778
zdhhc24
zinc finger, DHHC-type containing 24
chr16_-_17347727 0.52 ENSDART00000144392
zyx
zyxin
chr15_-_25518084 0.51 ENSDART00000158594
hif1al
hypoxia-inducible factor 1, alpha subunit, like
chr4_+_9177997 0.51 ENSDART00000057254
ENSDART00000154614
nfyba
nuclear transcription factor Y, beta a
chr23_-_31913231 0.50 ENSDART00000146852
ENSDART00000085054
mtfr2
mitochondrial fission regulator 2
chr14_-_33481428 0.50 ENSDART00000147059
ENSDART00000140001
ENSDART00000124242
ENSDART00000164836
ENSDART00000190104
ENSDART00000186833
ENSDART00000180873
lamp2
lysosomal-associated membrane protein 2
chr2_-_59285085 0.50 ENSDART00000131880
ftr34
finTRIM family, member 34
chr13_+_27232848 0.50 ENSDART00000138043
rin2
Ras and Rab interactor 2
chr7_+_17106160 0.49 ENSDART00000190048
ENSDART00000180004
ENSDART00000013409
prmt3
protein arginine methyltransferase 3
chr23_+_31913292 0.49 ENSDART00000136910
armc1l
armadillo repeat containing 1, like
chr13_+_35637048 0.49 ENSDART00000085037
thbs2a
thrombospondin 2a
chr25_-_27722614 0.49 ENSDART00000190154
zgc:153935
zgc:153935
chr17_-_45386546 0.49 ENSDART00000182647
tmem206
transmembrane protein 206
chr8_-_23612462 0.48 ENSDART00000025024
slc38a5b
solute carrier family 38, member 5b
chr1_+_40613297 0.47 ENSDART00000040798
ENSDART00000168067
ENSDART00000130490
naa15b
N(alpha)-acetyltransferase 15, NatA auxiliary subunit b
chr6_-_35046735 0.47 ENSDART00000143649
uap1
UDP-N-acetylglucosamine pyrophosphorylase 1
chr20_-_38787341 0.46 ENSDART00000136771
dnajc5ga
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a
chr8_-_37249813 0.46 ENSDART00000098634
ENSDART00000140233
ENSDART00000061328
rbm39b
RNA binding motif protein 39b
chr8_+_21353878 0.46 ENSDART00000056420
alas2
aminolevulinate, delta-, synthase 2
chr20_-_23426339 0.46 ENSDART00000004625
zar1
zygote arrest 1
chr24_-_2450597 0.46 ENSDART00000188080
ENSDART00000093331
rreb1a
ras responsive element binding protein 1a
chr25_+_20715950 0.45 ENSDART00000180223
ergic2
ERGIC and golgi 2
chr15_+_34988148 0.45 ENSDART00000076269
ccdc105
coiled-coil domain containing 105
chr15_+_1796313 0.44 ENSDART00000126253
fam124b
family with sequence similarity 124B
chr7_+_17816470 0.43 ENSDART00000173807
eml3
echinoderm microtubule associated protein like 3
chr9_-_40873934 0.43 ENSDART00000066424
pofut2
protein O-fucosyltransferase 2
chr3_+_46635527 0.43 ENSDART00000153971
si:dkey-248g21.1
si:dkey-248g21.1
chr3_+_13624815 0.41 ENSDART00000161451
pglyrp6
peptidoglycan recognition protein 6
chr21_-_17296789 0.40 ENSDART00000192180
gfi1b
growth factor independent 1B transcription repressor
chr24_-_11506054 0.40 ENSDART00000140217
ENSDART00000106310
prpf4bb
pre-mRNA processing factor 4Bb
chr9_+_25776971 0.40 ENSDART00000146011
zeb2a
zinc finger E-box binding homeobox 2a
chr23_-_36303216 0.40 ENSDART00000188720
cbx5
chromobox homolog 5 (HP1 alpha homolog, Drosophila)
chr7_+_756942 0.40 ENSDART00000152224
zgc:63470
zgc:63470
chr4_+_69559692 0.40 ENSDART00000164383
znf993
zinc finger protein 993
chr23_+_11285662 0.39 ENSDART00000111028
chl1a
cell adhesion molecule L1-like a
chr3_-_40054615 0.39 ENSDART00000003511
ENSDART00000102540
ENSDART00000146121
llgl1
lethal giant larvae homolog 1 (Drosophila)
chr11_-_45138857 0.38 ENSDART00000166501
cant1b
calcium activated nucleotidase 1b
chr16_-_28878080 0.38 ENSDART00000149501
si:dkey-239n17.4
si:dkey-239n17.4
chr7_+_20629411 0.38 ENSDART00000173710
si:dkey-19b23.15
si:dkey-19b23.15
chr8_+_48484455 0.36 ENSDART00000122737
PRDM16
si:ch211-263k4.2
chr23_+_44374041 0.36 ENSDART00000136056
ephb4b
eph receptor B4b
chr14_+_22022441 0.36 ENSDART00000149121
clcf1
cardiotrophin-like cytokine factor 1
chr9_-_31278048 0.36 ENSDART00000022204
zic5
zic family member 5 (odd-paired homolog, Drosophila)
chr20_-_38787047 0.35 ENSDART00000152913
ENSDART00000153430
dnajc5ga
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a
chr11_+_39107131 0.35 ENSDART00000105140
zgc:112255
zgc:112255
chr10_+_6884627 0.34 ENSDART00000125262
ENSDART00000121729
ENSDART00000105384
ddx4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
chr1_+_33668236 0.34 ENSDART00000122316
ENSDART00000102184
arl13b
ADP-ribosylation factor-like 13b
chr21_+_35041399 0.34 ENSDART00000188183
ENSDART00000021645
kdelc2
KDEL (Lys-Asp-Glu-Leu) containing 2
chr24_-_6078222 0.34 ENSDART00000146830
apbb1ip
amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
chr20_+_34671386 0.33 ENSDART00000152836
ENSDART00000138226
elp3
elongator acetyltransferase complex subunit 3
chr9_-_20372977 0.32 ENSDART00000113418
igsf3
immunoglobulin superfamily, member 3
chr24_+_6107901 0.32 ENSDART00000156419
si:ch211-37e10.2
si:ch211-37e10.2
chr7_-_7764287 0.32 ENSDART00000173021
ENSDART00000113131
intu
inturned planar cell polarity protein
chr16_-_24605969 0.32 ENSDART00000163305
ENSDART00000167121
fxyd6l
FXYD domain containing ion transport regulator 6 like
chr5_+_33287611 0.31 ENSDART00000125093
ENSDART00000146759
med22
mediator complex subunit 22
chr12_-_42214 0.31 ENSDART00000045071
foxk2
forkhead box K2
chr22_-_12746539 0.31 ENSDART00000175374
plcd4a
phospholipase C, delta 4a
chr11_+_24703108 0.31 ENSDART00000159173
gpr25
G protein-coupled receptor 25
chr24_-_37640705 0.31 ENSDART00000066583
zgc:112496
zgc:112496
chr4_-_15103646 0.31 ENSDART00000138183
ENSDART00000181044
nrf1
nuclear respiratory factor 1
chr17_-_23416897 0.30 ENSDART00000163391
si:ch211-149k12.3
si:ch211-149k12.3
chr25_+_5068442 0.29 ENSDART00000097522
parvg
parvin, gamma
chr4_-_16833518 0.28 ENSDART00000179867
ldhba
lactate dehydrogenase Ba
chr19_-_32914227 0.28 ENSDART00000186115
ENSDART00000124246
mtdha
metadherin a
chr18_+_7073130 0.27 ENSDART00000101216
ENSDART00000148947
si:dkey-88e18.2
si:dkey-88e18.2
chr14_-_17072736 0.27 ENSDART00000106333
phox2bb
paired-like homeobox 2bb
chr12_+_28888975 0.27 ENSDART00000076362
phkg2
phosphorylase kinase, gamma 2 (testis)
chr16_-_43344859 0.26 ENSDART00000058680
psma2
proteasome subunit alpha 2
chr3_+_45365098 0.26 ENSDART00000052746
ENSDART00000156555
ube2ia
ubiquitin-conjugating enzyme E2Ia
chr14_+_45406299 0.25 ENSDART00000173142
ENSDART00000112377
map1lc3cl
microtubule-associated protein 1 light chain 3 gamma, like
chr21_+_30746348 0.25 ENSDART00000050172
trpc2b
transient receptor potential cation channel, subfamily C, member 2b
chr11_-_486532 0.25 ENSDART00000093148
isy1
ISY1 splicing factor homolog
chr8_-_37249991 0.25 ENSDART00000189275
ENSDART00000178556
rbm39b
RNA binding motif protein 39b
chr6_-_39024538 0.24 ENSDART00000165839
tns2b
tensin 2b
chr8_+_30112655 0.24 ENSDART00000099027
fancc
Fanconi anemia, complementation group C
chr12_+_48803098 0.24 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr7_-_17816478 0.24 ENSDART00000149403
ecsit
ECSIT signalling integrator
chr23_-_25098913 0.24 ENSDART00000137316
CR847803.1

chr25_-_7705487 0.24 ENSDART00000128099
prdm11
PR domain containing 11
chr18_+_24921587 0.23 ENSDART00000191345
rgma
repulsive guidance molecule family member a
chr15_-_43284021 0.23 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr21_+_4313039 0.22 ENSDART00000141146
HTRA2 (1 of many)
si:dkey-84o3.4
chr20_-_9095105 0.21 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr8_+_11425048 0.21 ENSDART00000018739
tjp2b
tight junction protein 2b (zona occludens 2)
chr17_-_40956035 0.21 ENSDART00000124715
si:dkey-16j16.4
si:dkey-16j16.4
chr24_+_9412450 0.21 ENSDART00000132724
si:ch211-285f17.1
si:ch211-285f17.1
chr6_-_40581376 0.21 ENSDART00000185412
tspo
translocator protein
chr15_+_46357080 0.21 ENSDART00000155571
ENSDART00000156541
wu:fb18f06
wu:fb18f06
chr20_+_38458084 0.21 ENSDART00000020153
ENSDART00000135912
coq8a
coenzyme Q8A
chr24_+_12835935 0.20 ENSDART00000114762
nanog
nanog homeobox
chr8_+_45334255 0.20 ENSDART00000126848
ENSDART00000134161
ENSDART00000142322
ENSDART00000145011
ENSDART00000183560
pabpc1l
poly(A) binding protein, cytoplasmic 1-like
chr14_+_34490445 0.20 ENSDART00000132193
ENSDART00000148044
wnt8a
wingless-type MMTV integration site family, member 8a
chr21_-_20381481 0.20 ENSDART00000115236
atp5mea
ATP synthase membrane subunit ea
chr1_-_9123465 0.20 ENSDART00000081337
ndufab1a
NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1a
chr21_+_25777425 0.19 ENSDART00000021620
cldnd
claudin d
chr21_+_45717930 0.19 ENSDART00000164315
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
chr9_-_21918963 0.19 ENSDART00000090782
lmo7a
LIM domain 7a
chr8_+_23521974 0.18 ENSDART00000188130
ENSDART00000129378
sema3gb
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb
chr25_+_32755485 0.18 ENSDART00000162188
etfa
electron-transfer-flavoprotein, alpha polypeptide
chr21_-_45077429 0.18 ENSDART00000187268
ENSDART00000191003
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6
chr17_+_46818521 0.17 ENSDART00000156022
pimr14
Pim proto-oncogene, serine/threonine kinase, related 14
chr24_-_30862168 0.17 ENSDART00000168540
ptbp2a
polypyrimidine tract binding protein 2a
chr4_+_52356485 0.17 ENSDART00000170639
zgc:173705
zgc:173705
chr13_-_9213207 0.16 ENSDART00000139861
ENSDART00000140524
HTRA2 (1 of many)
si:dkey-33c12.11
chr19_-_42556086 0.16 ENSDART00000051731
si:dkey-267n13.1
si:dkey-267n13.1
chr10_+_31646020 0.15 ENSDART00000115251
esama
endothelial cell adhesion molecule a
chr12_+_23912074 0.15 ENSDART00000152864
svila
supervillin a
chr8_+_37527575 0.14 ENSDART00000147239
or135-1
odorant receptor, family H, subfamily 135, member 1
chr19_+_46237665 0.14 ENSDART00000159391
vps28
vacuolar protein sorting 28 (yeast)
chr14_+_7377552 0.14 ENSDART00000142158
ENSDART00000141471
hars
histidyl-tRNA synthetase
chr10_+_40633990 0.14 ENSDART00000190489
ENSDART00000139474
si:ch211-238p8.31
si:ch211-238p8.31
chr10_+_40756352 0.14 ENSDART00000156210
ENSDART00000144576
taar19f
trace amine associated receptor 19f
chr15_-_19705707 0.14 ENSDART00000047643
sytl2b
synaptotagmin-like 2b
chr8_-_52229462 0.14 ENSDART00000185949
ENSDART00000051825
tcf7l1b
transcription factor 7 like 1b
chr18_-_29896367 0.13 ENSDART00000191303
cmc2
C-x(9)-C motif containing 2
chr19_-_30524952 0.13 ENSDART00000103506
hpcal4
hippocalcin like 4
chr10_+_40660772 0.13 ENSDART00000148007
taar19l
trace amine associated receptor 19l
chr11_+_10909183 0.13 ENSDART00000064860
rbms1a
RNA binding motif, single stranded interacting protein 1a
chr25_+_16689633 0.12 ENSDART00000073416
ada2a
adenosine deaminase 2a
chr25_+_28825657 0.12 ENSDART00000153625
nfybb
nuclear transcription factor Y, beta b
chr2_-_38256589 0.12 ENSDART00000173064
si:ch211-14a17.10
si:ch211-14a17.10
chr3_-_17716322 0.12 ENSDART00000192664
CABZ01018956.1

chr5_-_44286987 0.11 ENSDART00000184112
si:ch73-337l15.2
si:ch73-337l15.2
chr22_+_14836040 0.11 ENSDART00000180951
gtpbp1l
GTP binding protein 1, like
chr19_-_30510259 0.11 ENSDART00000135128
ENSDART00000186169
ENSDART00000182974
ENSDART00000187797
bag6l
BCL2 associated athanogene 6, like
chr18_+_36786842 0.11 ENSDART00000123264
si:ch211-160d20.3
si:ch211-160d20.3
chr24_-_40744672 0.11 ENSDART00000160672
CU633479.1

chr24_+_32592748 0.10 ENSDART00000188256
si:ch211-282b22.1
si:ch211-282b22.1
chr4_+_2655358 0.10 ENSDART00000007638
bcap29
B cell receptor associated protein 29
chr25_-_6011034 0.10 ENSDART00000075197
ENSDART00000136054
snx22
sorting nexin 22
chr6_+_52891947 0.10 ENSDART00000174159
BX649282.3

chr8_+_24747865 0.10 ENSDART00000078656
slc16a4
solute carrier family 16, member 4
chr12_-_18577983 0.10 ENSDART00000193262
zdhhc4
zinc finger, DHHC-type containing 4
chr21_-_23110841 0.09 ENSDART00000147896
ENSDART00000003076
ENSDART00000184925
ENSDART00000190386
usp28
ubiquitin specific peptidase 28
chr12_+_3078221 0.09 ENSDART00000148835
ENSDART00000149427
sgca
sarcoglycan, alpha
chr22_-_392224 0.09 ENSDART00000124720
CABZ01072989.1

chr24_+_1023839 0.09 ENSDART00000082526
zgc:111976
zgc:111976
chr10_-_25217347 0.09 ENSDART00000036906
kpna7
karyopherin alpha 7 (importin alpha 8)
chr19_+_1688727 0.09 ENSDART00000115136
ENSDART00000166744
dennd3a
DENN/MADD domain containing 3a
chr7_+_2236317 0.09 ENSDART00000075859
zgc:172065
zgc:172065
chr8_+_23738122 0.08 ENSDART00000062983
rpl10a
ribosomal protein L10a
chr16_+_13818743 0.07 ENSDART00000090191
flcn
folliculin

Network of associatons between targets according to the STRING database.

First level regulatory network of gsx1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.4 GO:0030718 germ-line stem cell population maintenance(GO:0030718)
0.3 0.9 GO:0048785 hatching gland development(GO:0048785)
0.3 0.8 GO:0006290 somatic diversification of immune receptors via somatic mutation(GO:0002566) pyrimidine dimer repair(GO:0006290) somatic hypermutation of immunoglobulin genes(GO:0016446)
0.3 1.1 GO:0048210 Golgi vesicle fusion to target membrane(GO:0048210)
0.2 0.9 GO:0021742 abducens nucleus development(GO:0021742)
0.2 3.3 GO:0032525 somite rostral/caudal axis specification(GO:0032525)
0.2 0.8 GO:0006297 nucleotide-excision repair, DNA gap filling(GO:0006297)
0.2 0.9 GO:0000012 single strand break repair(GO:0000012)
0.2 1.0 GO:0000393 spliceosomal conformational changes to generate catalytic conformation(GO:0000393)
0.2 0.8 GO:0010719 photoreceptor cell morphogenesis(GO:0008594) negative regulation of epithelial to mesenchymal transition(GO:0010719)
0.1 0.7 GO:1903251 multi-ciliated epithelial cell differentiation(GO:1903251)
0.1 0.4 GO:0098543 detection of biotic stimulus(GO:0009595) detection of bacterium(GO:0016045) detection of other organism(GO:0098543) detection of external biotic stimulus(GO:0098581)
0.1 0.5 GO:0035124 embryonic caudal fin morphogenesis(GO:0035124)
0.1 0.9 GO:0061635 regulation of protein complex stability(GO:0061635)
0.1 0.5 GO:1902024 L-histidine transmembrane transport(GO:0089709) L-histidine transport(GO:1902024)
0.1 0.3 GO:0097500 receptor localization to nonmotile primary cilium(GO:0097500) protein localization to ciliary membrane(GO:1903441)
0.1 0.3 GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis.(GO:0002926)
0.1 0.3 GO:1904088 regulation of convergent extension involved in axis elongation(GO:1901232) positive regulation of epiboly involved in gastrulation with mouth forming second(GO:1904088)
0.1 0.3 GO:0070417 cellular response to cold(GO:0070417)
0.1 0.5 GO:0048739 cardiac muscle fiber development(GO:0048739)
0.1 0.7 GO:0051315 attachment of mitotic spindle microtubules to kinetochore(GO:0051315)
0.1 0.6 GO:0021910 smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290)
0.1 0.4 GO:0006004 fucose metabolic process(GO:0006004)
0.1 0.3 GO:0061549 sympathetic ganglion development(GO:0061549)
0.1 0.5 GO:0017196 N-terminal peptidyl-methionine acetylation(GO:0017196)
0.1 0.2 GO:0039015 spinal cord anterior/posterior patterning(GO:0021512) cell proliferation involved in pronephros development(GO:0039015) cell proliferation involved in kidney development(GO:0072111)
0.1 0.3 GO:0036306 embryonic heart tube elongation(GO:0036306)
0.1 0.2 GO:0045648 positive regulation of erythrocyte differentiation(GO:0045648)
0.1 1.5 GO:0035338 long-chain fatty-acyl-CoA biosynthetic process(GO:0035338)
0.1 0.9 GO:0015781 pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.1 0.4 GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis(GO:0090243)
0.1 0.7 GO:0033198 response to ATP(GO:0033198)
0.1 0.4 GO:0032918 polyamine acetylation(GO:0032917) spermidine acetylation(GO:0032918)
0.1 0.4 GO:0048680 positive regulation of axon regeneration(GO:0048680) positive regulation of neuron projection regeneration(GO:0070572)
0.1 0.4 GO:0033278 cell proliferation in midbrain(GO:0033278)
0.1 0.7 GO:0051382 kinetochore assembly(GO:0051382) kinetochore organization(GO:0051383)
0.0 1.0 GO:0031297 replication fork processing(GO:0031297)
0.0 0.2 GO:0031293 membrane protein intracellular domain proteolysis(GO:0031293)
0.0 0.5 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.4 GO:0032878 regulation of establishment or maintenance of cell polarity(GO:0032878)
0.0 0.2 GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338)
0.0 0.8 GO:0060021 palate development(GO:0060021)
0.0 0.5 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.6 GO:0031397 negative regulation of protein ubiquitination(GO:0031397)
0.0 0.1 GO:0097067 cellular response to thyroid hormone stimulus(GO:0097067)
0.0 0.5 GO:0014823 response to activity(GO:0014823)
0.0 0.2 GO:0070584 mitochondrion morphogenesis(GO:0070584)
0.0 0.5 GO:0018216 peptidyl-arginine methylation(GO:0018216)
0.0 1.1 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.8 GO:0006306 DNA alkylation(GO:0006305) DNA methylation(GO:0006306)
0.0 0.5 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.0 0.1 GO:0060847 cell proliferation in dorsal spinal cord(GO:0010456) endothelial cell fate specification(GO:0060847)
0.0 0.2 GO:1990845 adaptive thermogenesis(GO:1990845)
0.0 0.1 GO:0006154 adenosine catabolic process(GO:0006154) inosine metabolic process(GO:0046102) inosine biosynthetic process(GO:0046103)
0.0 0.2 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.0 1.5 GO:0021515 cell differentiation in spinal cord(GO:0021515)
0.0 0.1 GO:0070973 protein localization to endoplasmic reticulum exit site(GO:0070973)
0.0 2.2 GO:0050768 negative regulation of neurogenesis(GO:0050768)
0.0 0.1 GO:0030324 respiratory tube development(GO:0030323) lung development(GO:0030324)
0.0 0.6 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.6 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.8 GO:0018298 protein-chromophore linkage(GO:0018298)
0.0 0.1 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.0 0.3 GO:0060173 limb development(GO:0060173)
0.0 0.3 GO:0006995 cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562)
0.0 0.7 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.2 GO:0070527 platelet aggregation(GO:0070527)
0.0 0.5 GO:0016525 negative regulation of angiogenesis(GO:0016525)
0.0 1.0 GO:0007229 integrin-mediated signaling pathway(GO:0007229)
0.0 0.1 GO:0051881 regulation of mitochondrial membrane potential(GO:0051881)
0.0 0.2 GO:0051445 regulation of meiotic cell cycle(GO:0051445)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0032301 MutSalpha complex(GO:0032301)
0.2 0.5 GO:0031166 integral component of vacuolar membrane(GO:0031166) intrinsic component of vacuolar membrane(GO:0031310)
0.2 0.8 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.1 1.0 GO:0005662 DNA replication factor A complex(GO:0005662)
0.1 1.0 GO:0000974 Prp19 complex(GO:0000974)
0.1 0.5 GO:0070724 BMP receptor complex(GO:0070724)
0.1 0.5 GO:0031415 NatA complex(GO:0031415)
0.1 0.2 GO:0097189 apoptotic body(GO:0097189)
0.1 0.7 GO:0031080 nuclear pore outer ring(GO:0031080)
0.1 0.7 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.1 0.6 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 1.6 GO:0043186 P granule(GO:0043186)
0.0 1.0 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.7 GO:0044453 integral component of nuclear inner membrane(GO:0005639) intrinsic component of nuclear inner membrane(GO:0031229) nuclear membrane part(GO:0044453)
0.0 0.3 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.0 0.6 GO:1990907 beta-catenin-TCF complex(GO:1990907)
0.0 0.3 GO:0019773 proteasome core complex, alpha-subunit complex(GO:0019773)
0.0 0.3 GO:0060170 ciliary membrane(GO:0060170)
0.0 1.2 GO:0016592 mediator complex(GO:0016592)
0.0 0.2 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.0 0.3 GO:0005964 phosphorylase kinase complex(GO:0005964)
0.0 0.9 GO:0030864 cortical actin cytoskeleton(GO:0030864)
0.0 0.6 GO:0031463 Cul3-RING ubiquitin ligase complex(GO:0031463)
0.0 0.8 GO:0001750 photoreceptor outer segment(GO:0001750)
0.0 0.4 GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116)
0.0 0.1 GO:0071818 BAT3 complex(GO:0071818)
0.0 1.1 GO:0072686 mitotic spindle(GO:0072686)
0.0 0.1 GO:0016012 sarcoglycan complex(GO:0016012)
0.0 0.7 GO:0000777 condensed chromosome kinetochore(GO:0000777)
0.0 0.2 GO:0015030 Cajal body(GO:0015030)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.3 0.8 GO:0032137 guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.2 1.2 GO:0009374 biotin binding(GO:0009374)
0.2 0.5 GO:0016748 succinyltransferase activity(GO:0016748)
0.1 0.4 GO:0016019 peptidoglycan receptor activity(GO:0016019)
0.1 1.5 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.1 0.5 GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity(GO:0003977)
0.1 0.7 GO:0043515 kinetochore binding(GO:0043515)
0.1 0.8 GO:0008296 3'-5'-exodeoxyribonuclease activity(GO:0008296)
0.1 0.7 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 1.2 GO:0045159 myosin II binding(GO:0045159)
0.1 0.2 GO:0000035 acyl binding(GO:0000035)
0.1 0.3 GO:0061656 SUMO conjugating enzyme activity(GO:0061656)
0.1 0.3 GO:0060182 apelin receptor activity(GO:0060182)
0.1 0.8 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.1 0.7 GO:0035381 extracellular ATP-gated cation channel activity(GO:0004931) ATP-gated ion channel activity(GO:0035381)
0.1 0.4 GO:0019809 spermidine binding(GO:0019809)
0.1 0.3 GO:0004689 phosphorylase kinase activity(GO:0004689)
0.0 1.2 GO:0030247 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.5 GO:0005025 transforming growth factor beta receptor activity, type I(GO:0005025)
0.0 0.9 GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165)
0.0 0.3 GO:0004459 L-lactate dehydrogenase activity(GO:0004459)
0.0 0.5 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.0 0.6 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 0.5 GO:0004596 peptide alpha-N-acetyltransferase activity(GO:0004596)
0.0 0.5 GO:0016273 arginine N-methyltransferase activity(GO:0016273) protein-arginine N-methyltransferase activity(GO:0016274)
0.0 0.4 GO:0008417 fucosyltransferase activity(GO:0008417)
0.0 1.7 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.1 GO:0042809 vitamin D receptor binding(GO:0042809)
0.0 0.4 GO:0005003 ephrin receptor activity(GO:0005003)
0.0 0.8 GO:0008020 G-protein coupled photoreceptor activity(GO:0008020)
0.0 0.5 GO:0098632 protein binding involved in cell-cell adhesion(GO:0098632)
0.0 0.1 GO:0001948 glycoprotein binding(GO:0001948) proteoglycan binding(GO:0043394)
0.0 0.2 GO:0016018 cyclosporin A binding(GO:0016018)
0.0 0.6 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.6 GO:0008013 beta-catenin binding(GO:0008013)
0.0 0.2 GO:0015026 coreceptor activity(GO:0015026)
0.0 0.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.3 GO:0017080 sodium channel regulator activity(GO:0017080)
0.0 0.9 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.3 GO:0015279 store-operated calcium channel activity(GO:0015279)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 PID INTEGRIN A4B1 PATHWAY Alpha4 beta1 integrin signaling events
0.0 1.0 ST TUMOR NECROSIS FACTOR PATHWAY Tumor Necrosis Factor Pathway.
0.0 0.5 PID ECADHERIN KERATINOCYTE PATHWAY E-cadherin signaling in keratinocytes
0.0 0.7 PID CASPASE PATHWAY Caspase cascade in apoptosis
0.0 0.5 PID AJDISS 2PATHWAY Posttranslational regulation of adherens junction stability and dissassembly
0.0 0.4 PID AURORA B PATHWAY Aurora B signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.0 0.6 REACTOME VIRAL MESSENGER RNA SYNTHESIS Genes involved in Viral Messenger RNA Synthesis
0.0 0.9 REACTOME DOUBLE STRAND BREAK REPAIR Genes involved in Double-Strand Break Repair
0.0 0.8 REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex
0.0 0.5 REACTOME METABOLISM OF PORPHYRINS Genes involved in Metabolism of porphyrins
0.0 0.7 REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere
0.0 0.7 REACTOME MEIOTIC SYNAPSIS Genes involved in Meiotic Synapsis
0.0 0.7 REACTOME CYTOSOLIC TRNA AMINOACYLATION Genes involved in Cytosolic tRNA aminoacylation
0.0 0.3 REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS Genes involved in p130Cas linkage to MAPK signaling for integrins
0.0 0.3 REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS Genes involved in Glycogen breakdown (glycogenolysis)
0.0 1.2 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.2 REACTOME FANCONI ANEMIA PATHWAY Genes involved in Fanconi Anemia pathway
0.0 1.1 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.0 0.1 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 0.9 REACTOME TRAF6 MEDIATED INDUCTION OF NFKB AND MAP KINASES UPON TLR7 8 OR 9 ACTIVATION Genes involved in TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation