PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gsx1 | dr11_v1_chr5_-_67911111_67911111 | 0.16 | 5.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_30452945 Show fit | 1.70 |
ENSDART00000062303
|
forkhead box D5 |
|
chr21_-_37973819 Show fit | 1.60 |
ENSDART00000133405
|
ripply transcriptional repressor 1 |
|
chr25_+_14507567 Show fit | 1.55 |
ENSDART00000015681
|
developing brain homeobox 1b |
|
chr8_-_50888806 Show fit | 1.47 |
ENSDART00000053750
|
acyl-CoA synthetase long chain family member 2 |
|
chr18_+_619619 Show fit | 1.45 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
|
chr1_-_55248496 Show fit | 1.36 |
ENSDART00000098615
|
nanos homolog 3 |
|
chr8_+_46641314 Show fit | 1.24 |
ENSDART00000113803
|
hairy-related 3 |
|
chr2_+_20793982 Show fit | 1.23 |
ENSDART00000014785
|
proteoglycan 4a |
|
chr15_+_23799461 Show fit | 1.13 |
ENSDART00000154885
|
si:ch211-167j9.4 |
|
chr2_-_55298075 Show fit | 1.09 |
ENSDART00000186404
ENSDART00000149062 |
RAB8A, member RAS oncogene family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | GO:0032525 | somite rostral/caudal axis specification(GO:0032525) |
0.0 | 2.2 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.1 | 1.5 | GO:0035338 | long-chain fatty-acyl-CoA biosynthetic process(GO:0035338) |
0.0 | 1.5 | GO:0021515 | cell differentiation in spinal cord(GO:0021515) |
0.4 | 1.4 | GO:0030718 | germ-line stem cell population maintenance(GO:0030718) |
0.3 | 1.1 | GO:0048210 | Golgi vesicle fusion to target membrane(GO:0048210) |
0.0 | 1.1 | GO:0000266 | mitochondrial fission(GO:0000266) |
0.2 | 1.0 | GO:0000393 | spliceosomal conformational changes to generate catalytic conformation(GO:0000393) |
0.0 | 1.0 | GO:0031297 | replication fork processing(GO:0031297) |
0.0 | 1.0 | GO:0007229 | integrin-mediated signaling pathway(GO:0007229) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0043186 | P granule(GO:0043186) |
0.0 | 1.2 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 1.1 | GO:0072686 | mitotic spindle(GO:0072686) |
0.1 | 1.0 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.1 | 1.0 | GO:0000974 | Prp19 complex(GO:0000974) |
0.0 | 1.0 | GO:0030140 | trans-Golgi network transport vesicle(GO:0030140) |
0.0 | 0.9 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.3 | 0.8 | GO:0032301 | MutSalpha complex(GO:0032301) |
0.2 | 0.8 | GO:0043625 | delta DNA polymerase complex(GO:0043625) |
0.0 | 0.8 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
0.1 | 1.5 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.2 | 1.2 | GO:0009374 | biotin binding(GO:0009374) |
0.1 | 1.2 | GO:0045159 | myosin II binding(GO:0045159) |
0.0 | 1.2 | GO:0030247 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
0.3 | 0.9 | GO:0070259 | tyrosyl-DNA phosphodiesterase activity(GO:0070259) |
0.0 | 0.9 | GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity(GO:0015165) |
0.0 | 0.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.0 | 0.9 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
0.3 | 0.8 | GO:0032137 | guanine/thymine mispair binding(GO:0032137) single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) oxidized DNA binding(GO:0032356) oxidized purine DNA binding(GO:0032357) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.8 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 0.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 0.5 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 0.5 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 0.4 | PID AURORA B PATHWAY | Aurora B signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.1 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.9 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 0.9 | REACTOME TRAF6 MEDIATED INDUCTION OF NFKB AND MAP KINASES UPON TLR7 8 OR 9 ACTIVATION | Genes involved in TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation |
0.1 | 0.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 0.8 | REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX | Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex |
0.0 | 0.7 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.7 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 0.7 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 0.6 | REACTOME VIRAL MESSENGER RNA SYNTHESIS | Genes involved in Viral Messenger RNA Synthesis |