PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gsx2 | dr11_v1_chr20_-_22484621_22484621 | -0.72 | 5.6e-04 | Click! |
pnx | dr11_v1_chr10_+_2799285_2799285 | -0.67 | 1.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22310919 Show fit | 7.22 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr3_-_50443607 Show fit | 3.62 |
ENSDART00000074036
|
recoverin a |
|
chr17_-_37395460 Show fit | 3.46 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr22_+_7738966 Show fit | 3.27 |
ENSDART00000147073
|
si:ch73-44m9.5 |
|
chr11_+_38280454 Show fit | 3.27 |
ENSDART00000171496
|
si:dkey-166c18.1 |
|
chr11_+_43043171 Show fit | 3.22 |
ENSDART00000180344
|
|
|
chr9_-_14683574 Show fit | 3.10 |
ENSDART00000144022
|
par-3 family cell polarity regulator beta b |
|
chr5_+_51597677 Show fit | 3.05 |
ENSDART00000048210
ENSDART00000184797 |
creatine kinase, mitochondrial 2b (sarcomeric) |
|
chr6_+_40354424 Show fit | 2.90 |
ENSDART00000047416
|
solute carrier family 4, sodium bicarbonate cotransporter, member 8 |
|
chr8_-_21372446 Show fit | 2.77 |
ENSDART00000061481
ENSDART00000079293 |
elastase 2 like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 5.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 4.0 | GO:0006096 | glycolytic process(GO:0006096) |
0.3 | 3.6 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.1 | 3.6 | GO:0014046 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
1.2 | 3.5 | GO:0071236 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.2 | 3.3 | GO:0060158 | phospholipase C-activating dopamine receptor signaling pathway(GO:0060158) |
0.8 | 3.1 | GO:0051660 | establishment of centrosome localization(GO:0051660) |
0.2 | 3.1 | GO:0046314 | phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314) |
0.0 | 3.0 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.2 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 5.8 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 5.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 4.0 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.1 | 3.7 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 3.1 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.0 | 3.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.2 | 2.6 | GO:0045095 | keratin filament(GO:0045095) |
0.2 | 2.5 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
0.0 | 2.2 | GO:0005925 | cell-substrate adherens junction(GO:0005924) focal adhesion(GO:0005925) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 6.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 3.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.2 | 3.1 | GO:0004111 | creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775) |
0.0 | 3.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.2 | 2.9 | GO:0008510 | sodium:bicarbonate symporter activity(GO:0008510) |
0.0 | 2.9 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.0 | 2.9 | GO:0035091 | phosphatidylinositol binding(GO:0035091) |
0.3 | 2.8 | GO:0010436 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.4 | 2.7 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 1.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 1.4 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 1.3 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 1.2 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 0.9 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.1 | 0.9 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
0.0 | 0.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.7 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.6 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.2 | 2.5 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 2.2 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.1 | 1.7 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 1.7 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.7 | REACTOME NITRIC OXIDE STIMULATES GUANYLATE CYCLASE | Genes involved in Nitric oxide stimulates guanylate cyclase |
0.0 | 1.7 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.2 | 1.5 | REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK | Genes involved in Regulation of Rheb GTPase activity by AMPK |
0.1 | 1.5 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.2 | 1.4 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |