PRJEB1986: zebrafish developmental stages transcriptome
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000013441 | hes-related family bHLH transcription factor with YRPW motif 2 | |
ENSDARG00000055798 | hes related family bHLH transcription factor with YRPW motif like | |
ENSDARG00000070538 | hes-related family bHLH transcription factor with YRPW motif 1 | |
ENSDARG00000112770 | hes related family bHLH transcription factor with YRPW motif like |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hey2 | dr11_v1_chr20_-_39596338_39596338 | -0.88 | 8.8e-07 | Click! |
hey1 | dr11_v1_chr19_-_31802296_31802296 | -0.54 | 1.7e-02 | Click! |
heyl | dr11_v1_chr19_+_32553874_32553874 | -0.10 | 6.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_13580348 Show fit | 8.33 |
ENSDART00000067160
|
opsin 1 (cone pigments), short-wave-sensitive 1 |
|
chr3_+_23488652 Show fit | 6.39 |
ENSDART00000126282
|
nuclear receptor subfamily 1, group d, member 1 |
|
chr1_-_54765262 Show fit | 5.77 |
ENSDART00000150362
|
si:ch211-197k17.3 |
|
chr8_-_21372446 Show fit | 5.68 |
ENSDART00000061481
ENSDART00000079293 |
elastase 2 like |
|
chr8_-_25247284 Show fit | 4.34 |
ENSDART00000132697
|
guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 |
|
chr17_+_25414033 Show fit | 3.97 |
ENSDART00000001691
|
L-threonine dehydrogenase 2 |
|
chr13_-_293250 Show fit | 3.94 |
ENSDART00000138581
|
chitin synthase 1 |
|
chr14_+_35748385 Show fit | 3.92 |
ENSDART00000064617
ENSDART00000074671 ENSDART00000172803 |
glutamate receptor, ionotropic, AMPA 2b |
|
chr2_+_21090317 Show fit | 3.90 |
ENSDART00000109568
ENSDART00000139633 |
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha b |
|
chr14_+_35748206 Show fit | 3.63 |
ENSDART00000177391
|
glutamate receptor, ionotropic, AMPA 2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.1 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 10.0 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
2.1 | 6.4 | GO:1904059 | regulation of locomotor rhythm(GO:1904059) |
0.1 | 5.8 | GO:0014046 | dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059) |
0.0 | 4.8 | GO:0006486 | protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413) |
0.0 | 4.6 | GO:0006897 | endocytosis(GO:0006897) |
0.4 | 4.3 | GO:0050907 | detection of chemical stimulus involved in sensory perception(GO:0050907) |
0.4 | 4.0 | GO:0006567 | threonine metabolic process(GO:0006566) threonine catabolic process(GO:0006567) |
0.8 | 3.9 | GO:1901073 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
1.1 | 3.3 | GO:0014809 | regulation of skeletal muscle contraction by calcium ion signaling(GO:0014722) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 13.8 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.2 | 7.6 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.0 | 7.5 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 5.8 | GO:0070382 | exocytic vesicle(GO:0070382) |
0.3 | 4.4 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.6 | 4.2 | GO:0035517 | PR-DUB complex(GO:0035517) |
0.5 | 3.9 | GO:0030428 | cell septum(GO:0030428) |
0.5 | 3.3 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.4 | 3.1 | GO:0016586 | RSC complex(GO:0016586) |
0.1 | 3.1 | GO:0032590 | neuron projection membrane(GO:0032589) dendrite membrane(GO:0032590) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.0 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 8.5 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.5 | 7.6 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.1 | 6.7 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.2 | 6.0 | GO:0005246 | calcium channel regulator activity(GO:0005246) |
0.1 | 5.8 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 4.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 4.3 | GO:0031683 | G-protein beta/gamma-subunit complex binding(GO:0031683) |
0.8 | 4.2 | GO:0042975 | peroxisome proliferator activated receptor binding(GO:0042975) |
0.8 | 4.0 | GO:0008743 | L-threonine 3-dehydrogenase activity(GO:0008743) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.3 | 4.3 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 2.8 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 2.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 1.4 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 1.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.7 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.6 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
0.0 | 0.4 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.3 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.2 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.6 | 5.0 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.2 | 4.3 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.2 | 3.8 | REACTOME PYRUVATE METABOLISM | Genes involved in Pyruvate metabolism |
0.2 | 3.5 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.2 | 3.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.4 | 2.8 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.2 | 2.5 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.0 | 1.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.2 | 1.1 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |