PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hic1 | dr11_v1_chr15_+_25681044_25681044 | 0.70 | 9.0e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_77557279 Show fit | 3.11 |
ENSDART00000180113
|
|
|
chr4_-_77561679 Show fit | 2.90 |
ENSDART00000180809
|
|
|
chr4_+_55778679 Show fit | 2.40 |
ENSDART00000183009
|
|
|
chr4_+_55794876 Show fit | 2.40 |
ENSDART00000189043
|
|
|
chr4_+_55810436 Show fit | 2.40 |
ENSDART00000182875
|
|
|
chr4_-_68568233 Show fit | 2.40 |
ENSDART00000184284
|
|
|
chr4_-_55728559 Show fit | 2.34 |
ENSDART00000186201
|
|
|
chr1_+_9004719 Show fit | 1.52 |
ENSDART00000006211
ENSDART00000137211 |
protein kinase C, beta a |
|
chr19_-_22488952 Show fit | 1.30 |
ENSDART00000179856
ENSDART00000141503 |
plectin a |
|
chr16_+_41067586 Show fit | 1.21 |
ENSDART00000181876
|
SREBF chaperone |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
0.3 | 1.2 | GO:0006114 | glycerol biosynthetic process(GO:0006114) alditol biosynthetic process(GO:0019401) |
0.1 | 1.2 | GO:0006991 | response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501) |
0.1 | 1.2 | GO:0007257 | activation of JUN kinase activity(GO:0007257) positive regulation of JUN kinase activity(GO:0043507) |
0.1 | 0.8 | GO:0006670 | sphingosine metabolic process(GO:0006670) |
0.0 | 0.8 | GO:0044332 | Wnt signaling pathway involved in dorsal/ventral axis specification(GO:0044332) |
0.2 | 0.7 | GO:0051660 | establishment of centrosome localization(GO:0051660) |
0.1 | 0.7 | GO:0035372 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
0.0 | 0.5 | GO:0070782 | phosphatidylserine exposure on apoptotic cell surface(GO:0070782) |
0.0 | 0.5 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity(GO:0098962) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 1.2 | GO:0012507 | ER to Golgi transport vesicle membrane(GO:0012507) |
0.0 | 0.7 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 0.5 | GO:0098978 | glutamatergic synapse(GO:0098978) |
0.0 | 0.3 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.0 | 0.2 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
0.0 | 0.1 | GO:0030688 | preribosome, small subunit precursor(GO:0030688) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0004697 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.1 | 1.3 | GO:0030506 | ankyrin binding(GO:0030506) |
0.2 | 1.2 | GO:0008545 | JUN kinase kinase activity(GO:0008545) |
0.0 | 1.2 | GO:0032934 | sterol binding(GO:0032934) |
0.2 | 0.8 | GO:0042392 | sphingosine-1-phosphate phosphatase activity(GO:0042392) |
0.1 | 0.8 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.0 | 0.7 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.0 | 0.7 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.2 | 0.5 | GO:0008517 | folic acid transporter activity(GO:0008517) |
0.0 | 0.5 | GO:0030544 | Hsp70 protein binding(GO:0030544) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.1 | 1.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.1 | 0.8 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 0.8 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.3 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME JNK C JUN KINASES PHOSPHORYLATION AND ACTIVATION MEDIATED BY ACTIVATED HUMAN TAK1 | Genes involved in JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 |
0.0 | 0.8 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.4 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.0 | 0.3 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.0 | 0.2 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |