PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hinfp | dr11_v1_chr5_+_30596822_30596822 | 0.53 | 2.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_6010177 Show fit | 1.71 |
ENSDART00000170047
ENSDART00000022526 ENSDART00000161001 ENSDART00000188999 |
GTP binding protein 3, mitochondrial |
|
chr13_-_3155243 Show fit | 1.55 |
ENSDART00000139183
ENSDART00000050934 |
protein kinase domain containing, cytoplasmic a |
|
chr19_-_31765615 Show fit | 1.53 |
ENSDART00000103636
|
si:dkeyp-120h9.1 |
|
chr21_-_1742159 Show fit | 1.40 |
ENSDART00000151049
|
one cut homeobox 2 |
|
chr4_-_77557279 Show fit | 1.40 |
ENSDART00000180113
|
|
|
chr5_-_63065912 Show fit | 1.39 |
ENSDART00000161149
|
family with sequence similarity 57 member A |
|
chr23_+_1216215 Show fit | 1.37 |
ENSDART00000165957
|
utrophin |
|
chr2_-_56635744 Show fit | 1.29 |
ENSDART00000167790
ENSDART00000168160 |
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b |
|
chr4_+_27018663 Show fit | 1.28 |
ENSDART00000180778
|
|
|
chr14_+_14992909 Show fit | 1.26 |
ENSDART00000182203
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.4 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
0.3 | 1.5 | GO:0033238 | regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) |
0.2 | 1.4 | GO:0048635 | negative regulation of muscle organ development(GO:0048635) |
0.0 | 1.4 | GO:0055088 | lipid homeostasis(GO:0055088) |
0.0 | 1.3 | GO:0048013 | ephrin receptor signaling pathway(GO:0048013) |
0.2 | 1.1 | GO:1901741 | positive regulation of myoblast fusion(GO:1901741) |
0.0 | 1.1 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
0.3 | 1.0 | GO:0033210 | leptin-mediated signaling pathway(GO:0033210) cellular response to leptin stimulus(GO:0044320) response to leptin(GO:0044321) |
0.0 | 0.9 | GO:0030330 | DNA damage response, signal transduction by p53 class mediator(GO:0030330) |
0.0 | 0.8 | GO:1990126 | retrograde transport, endosome to plasma membrane(GO:1990126) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | GO:0016282 | eukaryotic 43S preinitiation complex(GO:0016282) |
0.1 | 0.5 | GO:0016460 | myosin II complex(GO:0016460) |
0.1 | 0.4 | GO:0044233 | ER-mitochondrion membrane contact site(GO:0044233) |
0.0 | 0.4 | GO:0016580 | Sin3 complex(GO:0016580) |
0.0 | 0.4 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 0.4 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.0 | 0.4 | GO:0005903 | brush border(GO:0005903) |
0.0 | 0.4 | GO:0030140 | trans-Golgi network transport vesicle(GO:0030140) |
0.0 | 0.4 | GO:0043186 | P granule(GO:0043186) |
0.0 | 0.3 | GO:0036157 | outer dynein arm(GO:0036157) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0036459 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.0 | 1.7 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.0 | 1.6 | GO:0016307 | phosphatidylinositol phosphate kinase activity(GO:0016307) |
0.0 | 1.6 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
0.1 | 1.5 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
0.4 | 1.4 | GO:0097108 | hedgehog family protein binding(GO:0097108) |
0.0 | 1.1 | GO:0004707 | MAP kinase activity(GO:0004707) |
0.0 | 1.1 | GO:0015171 | amino acid transmembrane transporter activity(GO:0015171) |
0.2 | 1.0 | GO:0004925 | prolactin receptor activity(GO:0004925) |
0.0 | 0.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.9 | PID LKB1 PATHWAY | LKB1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 0.2 | REACTOME NOTCH HLH TRANSCRIPTION PATHWAY | Genes involved in Notch-HLH transcription pathway |
0.0 | 0.2 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |