PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hivep1 | dr11_v1_chr19_-_3482138_3482138 | -0.71 | 6.4e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_46294337 Show fit | 2.62 |
ENSDART00000040769
|
nuclear receptor subfamily 2, group F, member 5 |
|
chr1_-_59571758 Show fit | 2.26 |
ENSDART00000193546
ENSDART00000167087 |
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 |
|
chr1_-_18585046 Show fit | 2.21 |
ENSDART00000147228
|
family with sequence similarity 114, member A1 |
|
chr15_-_36365840 Show fit | 1.99 |
ENSDART00000192926
|
si:dkey-23k10.3 |
|
chr20_+_98179 Show fit | 1.81 |
ENSDART00000022725
|
si:ch1073-155h21.1 |
|
chr14_-_38828057 Show fit | 1.64 |
ENSDART00000186088
|
spindle apparatus coiled-coil protein 1 |
|
chr25_+_16646113 Show fit | 1.60 |
ENSDART00000110426
|
cat eye syndrome chromosome region, candidate 2 |
|
chr22_+_9922301 Show fit | 1.55 |
ENSDART00000105924
|
bloody fingers |
|
chr13_-_6081803 Show fit | 1.55 |
ENSDART00000099224
|
deltaD |
|
chr13_-_25196758 Show fit | 1.52 |
ENSDART00000184722
|
adenosine kinase a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.6 | GO:0032526 | response to retinoic acid(GO:0032526) |
0.0 | 2.1 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.1 | 1.8 | GO:0006383 | transcription from RNA polymerase III promoter(GO:0006383) |
0.2 | 1.6 | GO:0007080 | mitotic metaphase plate congression(GO:0007080) |
0.0 | 1.6 | GO:0043044 | ATP-dependent chromatin remodeling(GO:0043044) |
0.3 | 1.5 | GO:0044209 | AMP salvage(GO:0044209) |
0.2 | 1.5 | GO:0021523 | somatic motor neuron differentiation(GO:0021523) |
0.0 | 1.4 | GO:0038061 | NIK/NF-kappaB signaling(GO:0038061) |
0.0 | 1.4 | GO:0000460 | maturation of 5.8S rRNA(GO:0000460) |
0.0 | 1.3 | GO:0006413 | translational initiation(GO:0006413) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 1.7 | GO:0048475 | membrane coat(GO:0030117) coated membrane(GO:0048475) |
0.1 | 1.6 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.1 | 1.6 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.1 | 1.3 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.1 | 1.2 | GO:0071014 | post-mRNA release spliceosomal complex(GO:0071014) |
0.1 | 1.2 | GO:0000178 | exosome (RNase complex)(GO:0000178) |
0.1 | 1.2 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.0 | 1.2 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 1.2 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.3 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.0 | 2.1 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.0 | 2.0 | GO:0004879 | RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding(GO:0004879) |
0.1 | 1.8 | GO:0004698 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.2 | 1.6 | GO:0043515 | kinetochore binding(GO:0043515) |
0.3 | 1.5 | GO:0004001 | adenosine kinase activity(GO:0004001) |
0.1 | 1.5 | GO:0005112 | Notch binding(GO:0005112) |
0.0 | 1.3 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.4 | 1.2 | GO:0004736 | pyruvate carboxylase activity(GO:0004736) |
0.1 | 1.2 | GO:0070915 | lysophosphatidic acid receptor activity(GO:0070915) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 1.4 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.0 | 1.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.2 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 1.0 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 0.8 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
0.0 | 0.7 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.0 | 0.6 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 0.6 | PID GMCSF PATHWAY | GMCSF-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.1 | 1.5 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.1 | 1.5 | REACTOME TRAF6 MEDIATED NFKB ACTIVATION | Genes involved in TRAF6 mediated NF-kB activation |
0.0 | 1.2 | REACTOME APC CDC20 MEDIATED DEGRADATION OF NEK2A | Genes involved in APC-Cdc20 mediated degradation of Nek2A |
0.1 | 1.1 | REACTOME P75NTR SIGNALS VIA NFKB | Genes involved in p75NTR signals via NF-kB |
0.1 | 1.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 1.1 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 1.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.1 | 0.7 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 0.7 | REACTOME ACTIVATION OF NF KAPPAB IN B CELLS | Genes involved in Activation of NF-kappaB in B Cells |