Project
PRJEB1986: zebrafish developmental stages transcriptome
Navigation
Downloads
Results for hmbox1a+zgc:91944
Z-value: 0.73
Motif logo
Transcription factors associated with hmbox1a+zgc:91944
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CABZ01078261.1 | dr11_v1_chr20_+_49787584_49787584 | 0.47 | 4.3e-02 | Click! |
| zgc:91944 | dr11_v1_chr19_-_32600638_32600638 | -0.13 | 5.8e-01 | Click! |
| hmbox1a | dr11_v1_chr17_-_16324565_16324565 | 0.04 | 8.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr7_-_71758307 Show fit | 2.19 |
ENSDART00000161067
ENSDART00000165253 |
myomesin 1b |
|
| chr11_+_43043171 Show fit | 1.52 |
ENSDART00000180344
|
|
|
| chr7_+_35075847 Show fit | 1.44 |
ENSDART00000193469
ENSDART00000037346 |
chymotrypsinogen B1 |
|
| chr4_-_77506362 Show fit | 1.31 |
ENSDART00000174387
ENSDART00000181181 |
|
|
| chr15_-_17074393 Show fit | 1.00 |
ENSDART00000155526
|
si:ch211-24o10.6 |
|
| chr4_+_72798545 Show fit | 0.91 |
ENSDART00000181727
|
myelin regulatory factor-like |
|
| chr19_-_40192249 Show fit | 0.90 |
ENSDART00000051972
|
granulin 1 |
|
| chr12_+_34896956 Show fit | 0.89 |
ENSDART00000055415
|
peripherin 2a (retinal degeneration, slow) |
|
| chr3_+_39540014 Show fit | 0.86 |
ENSDART00000074848
|
zgc:165423 |
|
| chr23_-_44786844 Show fit | 0.79 |
ENSDART00000148669
|
si:ch73-269m23.5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of hmbox1a+zgc:91944
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0006936 | muscle contraction(GO:0006936) |
| 0.0 | 1.1 | GO:0046928 | regulation of neurotransmitter secretion(GO:0046928) |
| 0.1 | 0.9 | GO:0098962 | regulation of postsynaptic neurotransmitter receptor activity(GO:0098962) |
| 0.1 | 0.7 | GO:0035372 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
| 0.1 | 0.7 | GO:0032309 | icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) arachidonate transport(GO:1903963) |
| 0.0 | 0.7 | GO:0006884 | cell volume homeostasis(GO:0006884) |
| 0.0 | 0.7 | GO:0070593 | dendrite self-avoidance(GO:0070593) |
| 0.1 | 0.6 | GO:0071947 | protein deubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0071947) |
| 0.0 | 0.6 | GO:0008156 | negative regulation of DNA replication(GO:0008156) |
| 0.0 | 0.6 | GO:0001757 | somite specification(GO:0001757) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.7 | GO:0031430 | M band(GO:0031430) |
| 0.0 | 0.9 | GO:0098978 | glutamatergic synapse(GO:0098978) |
| 0.0 | 0.9 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
| 0.1 | 0.8 | GO:0030891 | VCB complex(GO:0030891) |
| 0.0 | 0.7 | GO:0035371 | microtubule plus-end(GO:0035371) |
| 0.0 | 0.7 | GO:0043195 | terminal bouton(GO:0043195) |
| 0.1 | 0.5 | GO:0098982 | GABA-ergic synapse(GO:0098982) |
| 0.0 | 0.5 | GO:0043596 | nuclear replication fork(GO:0043596) |
| 0.0 | 0.4 | GO:0042613 | MHC class II protein complex(GO:0042613) |
| 0.0 | 0.4 | GO:0098831 | cytoskeleton of presynaptic active zone(GO:0048788) presynaptic active zone cytoplasmic component(GO:0098831) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.6 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 2.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.1 | 0.7 | GO:0005412 | glucose:sodium symporter activity(GO:0005412) |
| 0.0 | 0.7 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
| 0.0 | 0.7 | GO:0015379 | cation:chloride symporter activity(GO:0015377) potassium:chloride symporter activity(GO:0015379) |
| 0.0 | 0.7 | GO:0098632 | protein binding involved in cell-cell adhesion(GO:0098632) |
| 0.0 | 0.7 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
| 0.0 | 0.6 | GO:0070530 | K63-linked polyubiquitin binding(GO:0070530) |
| 0.0 | 0.6 | GO:0000062 | fatty-acyl-CoA binding(GO:0000062) |
| 0.0 | 0.6 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
| 0.0 | 0.7 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
| 0.0 | 0.3 | PID IL5 PATHWAY | IL5-mediated signaling events |
| 0.0 | 0.3 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
| 0.0 | 0.2 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
| 0.0 | 0.2 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
| 0.2 | 0.7 | REACTOME ACYL CHAIN REMODELLING OF PI | Genes involved in Acyl chain remodelling of PI |
| 0.1 | 0.6 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
| 0.0 | 0.6 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |
| 0.1 | 0.5 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
| 0.0 | 0.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.0 | 0.5 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
| 0.0 | 0.5 | REACTOME REGULATION OF WATER BALANCE BY RENAL AQUAPORINS | Genes involved in Regulation of Water Balance by Renal Aquaporins |
| 0.0 | 0.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.0 | 0.3 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |