PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hmx2 | dr11_v1_chr17_-_21784152_21784152 | -0.63 | 3.8e-03 | Click! |
hmx3a | dr11_v1_chr17_-_21793113_21793113 | -0.52 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_60721342 Show fit | 7.42 |
ENSDART00000157772
|
forkhead box J1a |
|
chr4_-_9909371 Show fit | 3.47 |
ENSDART00000102656
|
si:dkey-22l11.6 |
|
chr10_-_1961930 Show fit | 3.30 |
ENSDART00000122446
|
teratocarcinoma-derived growth factor 1 |
|
chr16_+_54209504 Show fit | 2.94 |
ENSDART00000020033
|
X-ray repair complementing defective repair in Chinese hamster cells 1 |
|
chr24_+_38301080 Show fit | 2.83 |
ENSDART00000105672
|
myosin binding protein C, fast type b |
|
chr3_-_27647845 Show fit | 2.28 |
ENSDART00000151625
|
si:ch211-157c3.4 |
|
chr2_-_47431205 Show fit | 1.92 |
ENSDART00000014350
ENSDART00000038828 |
paired box 3a |
|
chr8_-_22965916 Show fit | 1.92 |
ENSDART00000143791
|
elastin microfibril interfacer 3a |
|
chr4_+_25607101 Show fit | 1.56 |
ENSDART00000133929
|
acyl-CoA thioesterase 14 |
|
chr11_-_41966854 Show fit | 1.49 |
ENSDART00000055709
|
hairy-related 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 7.8 | GO:0060295 | regulation of cilium movement involved in cell motility(GO:0060295) regulation of cilium beat frequency involved in ciliary motility(GO:0060296) regulation of cilium-dependent cell motility(GO:1902019) |
0.0 | 4.4 | GO:0008380 | RNA splicing(GO:0008380) |
0.7 | 3.7 | GO:0000012 | single strand break repair(GO:0000012) |
1.1 | 3.3 | GO:0090008 | hypoblast development(GO:0090008) |
0.0 | 2.8 | GO:0090630 | activation of GTPase activity(GO:0090630) |
0.0 | 2.6 | GO:0032259 | methylation(GO:0032259) |
0.2 | 2.3 | GO:0060236 | regulation of mitotic spindle organization(GO:0060236) |
0.1 | 1.9 | GO:0050936 | xanthophore differentiation(GO:0050936) |
0.1 | 1.9 | GO:0048570 | notochord morphogenesis(GO:0048570) |
0.1 | 1.8 | GO:0032481 | positive regulation of type I interferon production(GO:0032481) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.6 | GO:0005880 | nuclear microtubule(GO:0005880) |
0.0 | 2.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.2 | 2.1 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.1 | 1.7 | GO:0071564 | npBAF complex(GO:0071564) |
0.1 | 1.6 | GO:0005680 | anaphase-promoting complex(GO:0005680) |
0.0 | 1.6 | GO:0005814 | centriole(GO:0005814) |
0.0 | 1.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 1.4 | GO:0008023 | transcription elongation factor complex(GO:0008023) |
0.3 | 1.3 | GO:0070209 | ASTRA complex(GO:0070209) |
0.0 | 1.3 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 29.5 | GO:0001012 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
0.1 | 3.8 | GO:0003684 | damaged DNA binding(GO:0003684) |
0.2 | 3.2 | GO:0070697 | activin receptor binding(GO:0070697) |
0.1 | 2.7 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.0 | 2.7 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 2.6 | GO:0019209 | kinase activator activity(GO:0019209) protein kinase activator activity(GO:0030295) |
0.0 | 2.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 2.4 | GO:0034062 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.0 | 2.3 | GO:0032182 | ubiquitin-like protein binding(GO:0032182) |
0.2 | 2.1 | GO:0035198 | miRNA binding(GO:0035198) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.4 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 3.3 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.1 | 2.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 1.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.3 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.1 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 1.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 1.0 | PID ATM PATHWAY | ATM pathway |
0.1 | 0.8 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 0.8 | SA TRKA RECEPTOR | The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.3 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.2 | 2.9 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |
0.1 | 2.3 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.1 | 1.7 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 1.7 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.3 | REACTOME DOUBLE STRAND BREAK REPAIR | Genes involved in Double-Strand Break Repair |
0.0 | 1.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.2 | REACTOME RNA POL I TRANSCRIPTION INITIATION | Genes involved in RNA Polymerase I Transcription Initiation |
0.2 | 1.0 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.0 | 0.9 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |