PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hmx4 | dr11_v1_chr1_-_40911332_40911332 | -0.69 | 1.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr13_-_992458 Show fit | 14.21 |
ENSDART00000114655
|
beaded filament structural protein 1 |
|
chr22_+_7439476 Show fit | 7.44 |
ENSDART00000021594
ENSDART00000063389 |
zgc:92041 |
|
chr21_+_30043054 Show fit | 6.62 |
ENSDART00000065448
|
fatty acid binding protein 6, ileal (gastrotropin) |
|
chr22_+_7439186 Show fit | 5.97 |
ENSDART00000190667
|
zgc:92041 |
|
chr3_+_31039923 Show fit | 5.27 |
ENSDART00000147706
|
cytochrome c oxidase subunit VIa polypeptide 2 |
|
chr22_+_7497319 Show fit | 5.00 |
ENSDART00000034564
|
zgc:92511 |
|
chr19_+_233143 Show fit | 4.94 |
ENSDART00000175273
|
synaptic Ras GTPase activating protein 1a |
|
chr13_+_3667230 Show fit | 4.90 |
ENSDART00000131553
ENSDART00000189841 ENSDART00000183554 ENSDART00000018737 |
QKI, KH domain containing, RNA binding b |
|
chr16_-_26074529 Show fit | 4.83 |
ENSDART00000148653
ENSDART00000148923 |
transmembrane protein 145 |
|
chr15_+_45640906 Show fit | 4.64 |
ENSDART00000149361
ENSDART00000149079 |
S-antigen; retina and pineal gland (arrestin) b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.9 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
0.1 | 9.8 | GO:0048024 | regulation of mRNA splicing, via spliceosome(GO:0048024) |
0.0 | 6.0 | GO:0030198 | extracellular matrix organization(GO:0030198) extracellular structure organization(GO:0043062) |
0.2 | 5.8 | GO:0051209 | release of sequestered calcium ion into cytosol(GO:0051209) |
0.4 | 5.3 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
0.0 | 5.0 | GO:0043087 | regulation of GTPase activity(GO:0043087) |
0.2 | 4.8 | GO:0043507 | activation of JUN kinase activity(GO:0007257) positive regulation of JUN kinase activity(GO:0043507) |
0.4 | 4.6 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.1 | 4.6 | GO:1902284 | axon extension involved in axon guidance(GO:0048846) neuron projection extension involved in neuron projection guidance(GO:1902284) |
0.1 | 4.5 | GO:0071482 | cellular response to light stimulus(GO:0071482) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 12.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.8 | 5.8 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.1 | 5.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.4 | 5.3 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.0 | 5.0 | GO:0005911 | cell-cell junction(GO:0005911) |
0.0 | 5.0 | GO:0043005 | neuron projection(GO:0043005) |
0.2 | 4.6 | GO:0001917 | photoreceptor inner segment(GO:0001917) |
0.0 | 4.3 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 4.3 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 4.1 | GO:0043025 | neuronal cell body(GO:0043025) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 14.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
0.1 | 9.9 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
0.0 | 9.2 | GO:0005509 | calcium ion binding(GO:0005509) |
1.4 | 8.5 | GO:0032052 | bile acid binding(GO:0032052) |
0.1 | 6.7 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.1 | 6.2 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
1.2 | 5.8 | GO:0048763 | ryanodine-sensitive calcium-release channel activity(GO:0005219) calcium-induced calcium release activity(GO:0048763) |
0.4 | 5.4 | GO:0031682 | G-protein gamma-subunit binding(GO:0031682) |
0.2 | 5.3 | GO:0015002 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.1 | 4.8 | GO:0032266 | phosphatidylinositol-3-phosphate binding(GO:0032266) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 4.2 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 4.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.4 | 3.2 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.2 | 1.9 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.1 | 1.9 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.1 | 1.4 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 1.4 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 1.3 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 1.3 | PID BCR 5PATHWAY | BCR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 6.6 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.2 | 4.6 | REACTOME JNK C JUN KINASES PHOSPHORYLATION AND ACTIVATION MEDIATED BY ACTIVATED HUMAN TAK1 | Genes involved in JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 |
0.1 | 4.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 4.2 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.3 | 4.1 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.2 | 3.1 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.0 | 2.9 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.1 | 2.3 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 2.0 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.9 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |