PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hnf1bb | dr11_v1_chr21_+_38817785_38817843 | 0.66 | 2.2e-03 | Click! |
hnf1ba | dr11_v1_chr15_-_16012963_16012963 | 0.31 | 2.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_17159761 Show fit | 6.48 |
ENSDART00000080449
|
solute carrier family 5 (sodium/glucose cotransporter), member 1 |
|
chr5_-_30620625 Show fit | 6.42 |
ENSDART00000098273
|
transcobalamin like |
|
chr7_-_35066457 Show fit | 6.27 |
ENSDART00000058067
|
zgc:112160 |
|
chr24_-_4765740 Show fit | 6.01 |
ENSDART00000121576
|
carboxypeptidase B1 (tissue) |
|
chr5_+_45677781 Show fit | 5.18 |
ENSDART00000163120
ENSDART00000126537 |
group-specific component (vitamin D binding protein) |
|
chr20_-_40750953 Show fit | 4.47 |
ENSDART00000061256
|
connexin 28.9 |
|
chr20_-_40754794 Show fit | 3.94 |
ENSDART00000187251
|
connexin 32.3 |
|
chr10_+_25726694 Show fit | 3.62 |
ENSDART00000140308
|
UDP glucuronosyltransferase 5 family, polypeptide D1 |
|
chr6_+_30456788 Show fit | 3.59 |
ENSDART00000121492
|
|
|
chr7_-_29534001 Show fit | 3.45 |
ENSDART00000124028
|
annexin A2b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 14.0 | GO:0010951 | negative regulation of endopeptidase activity(GO:0010951) |
0.0 | 7.7 | GO:0006814 | sodium ion transport(GO:0006814) |
0.1 | 6.0 | GO:0071466 | cellular response to xenobiotic stimulus(GO:0071466) |
0.2 | 5.4 | GO:0051180 | vitamin transport(GO:0051180) |
0.2 | 3.5 | GO:0009435 | NAD biosynthetic process(GO:0009435) |
0.7 | 3.4 | GO:0030299 | intestinal cholesterol absorption(GO:0030299) |
0.1 | 3.3 | GO:0015701 | bicarbonate transport(GO:0015701) |
0.8 | 3.2 | GO:0019401 | glycerol biosynthetic process(GO:0006114) alditol biosynthetic process(GO:0019401) short-chain fatty acid catabolic process(GO:0019626) response to dexamethasone(GO:0071548) |
1.0 | 3.1 | GO:0044320 | leptin-mediated signaling pathway(GO:0033210) cellular response to leptin stimulus(GO:0044320) response to leptin(GO:0044321) |
0.3 | 2.2 | GO:0001579 | medium-chain fatty acid transport(GO:0001579) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 26.6 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 3.3 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 3.3 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 3.0 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.0 | 2.4 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 2.1 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 2.0 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 1.8 | GO:0005579 | membrane attack complex(GO:0005579) |
0.0 | 1.5 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.1 | 1.1 | GO:0030056 | hemidesmosome(GO:0030056) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 14.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 8.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 6.0 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
1.7 | 5.2 | GO:0005499 | vitamin D binding(GO:0005499) |
0.9 | 4.5 | GO:0005412 | glucose:sodium symporter activity(GO:0005412) |
0.1 | 4.5 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 3.4 | GO:0055102 | phospholipase inhibitor activity(GO:0004859) lipase inhibitor activity(GO:0055102) |
0.1 | 3.2 | GO:0030145 | manganese ion binding(GO:0030145) |
0.1 | 3.1 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.1 | 3.1 | GO:0017046 | peptide hormone binding(GO:0017046) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 4.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 3.1 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.0 | 2.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 1.3 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 0.7 | ST STAT3 PATHWAY | STAT3 Pathway |
0.0 | 0.4 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.6 | REACTOME TRANSPORT OF GLUCOSE AND OTHER SUGARS BILE SALTS AND ORGANIC ACIDS METAL IONS AND AMINE COMPOUNDS | Genes involved in Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds |
0.2 | 5.2 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
1.1 | 3.2 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.1 | 2.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.2 | 2.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 2.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.0 | 1.9 | REACTOME MRNA PROCESSING | Genes involved in mRNA Processing |
0.2 | 1.6 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.3 | 1.4 | REACTOME GLYCOPROTEIN HORMONES | Genes involved in Glycoprotein hormones |
0.0 | 1.3 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |