PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hnf4a | dr11_v1_chr23_+_25832689_25832689 | 0.91 | 4.2e-08 | Click! |
CABZ01057488.1 | dr11_v1_chr7_+_69019851_69019851 | -0.25 | 3.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_11385155 Show fit | 15.03 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr7_-_26457208 Show fit | 10.29 |
ENSDART00000173519
|
zgc:172079 |
|
chr12_-_20362041 Show fit | 9.33 |
ENSDART00000184145
ENSDART00000105952 |
aquaporin 8a, tandem duplicate 2 |
|
chr13_-_303137 Show fit | 8.95 |
ENSDART00000099131
|
chitin synthase 1 |
|
chr13_+_50375800 Show fit | 8.00 |
ENSDART00000099537
|
cytochrome c oxidase subunit Vb 2 |
|
chr25_-_26758253 Show fit | 7.59 |
ENSDART00000123004
|
si:dkeyp-73b11.8 |
|
chr17_-_14613711 Show fit | 7.55 |
ENSDART00000157345
|
serine dehydratase-like |
|
chr6_+_30091811 Show fit | 7.48 |
ENSDART00000088403
|
melanotransferrin |
|
chr9_-_9977827 Show fit | 7.23 |
ENSDART00000187315
ENSDART00000010246 |
UDP glucuronosyltransferase 1 family a, b |
|
chr7_+_73444325 Show fit | 7.08 |
ENSDART00000123016
|
si:ch211-142d6.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.3 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
0.6 | 9.3 | GO:1901642 | nucleoside transport(GO:0015858) nucleoside transmembrane transport(GO:1901642) |
1.8 | 9.0 | GO:0006031 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.0 | 8.4 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.6 | 8.0 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
1.9 | 7.6 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
0.2 | 7.5 | GO:0006826 | iron ion transport(GO:0006826) |
0.9 | 7.0 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.7 | 6.7 | GO:1990402 | embryonic liver development(GO:1990402) |
1.1 | 6.5 | GO:0038065 | collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063) collagen-activated signaling pathway(GO:0038065) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 93.1 | GO:0016021 | integral component of membrane(GO:0016021) |
0.0 | 10.6 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
1.1 | 9.0 | GO:0030428 | cell septum(GO:0030428) |
0.0 | 7.7 | GO:0031966 | mitochondrial membrane(GO:0031966) |
0.1 | 7.5 | GO:0055037 | recycling endosome(GO:0055037) |
0.0 | 6.7 | GO:0009986 | cell surface(GO:0009986) |
2.2 | 6.5 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.1 | 5.9 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 5.8 | GO:0005902 | microvillus(GO:0005902) |
0.1 | 4.7 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 17.2 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 12.9 | GO:0015370 | solute:sodium symporter activity(GO:0015370) |
0.1 | 11.3 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
1.0 | 9.3 | GO:0015250 | water channel activity(GO:0015250) |
1.1 | 9.0 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.0 | 8.8 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.1 | 8.3 | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811) |
0.1 | 8.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.3 | 8.0 | GO:0016675 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
1.5 | 7.6 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.9 | ST GA13 PATHWAY | G alpha 13 Pathway |
0.1 | 2.4 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.1 | 2.0 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 1.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 1.1 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.1 | 0.3 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
0.0 | 0.1 | PID S1P S1P1 PATHWAY | S1P1 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 16.5 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 6.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 5.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.3 | 4.7 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.6 | 4.6 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 3.2 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |
0.2 | 3.0 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.1 | 2.5 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.2 | 2.1 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
0.5 | 2.0 | REACTOME G BETA GAMMA SIGNALLING THROUGH PLC BETA | Genes involved in G beta:gamma signalling through PLC beta |