PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa10b | dr11_v1_chr16_+_20910186_20910186 | 0.88 | 6.6e-07 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_29499363 Show fit | 2.81 |
ENSDART00000152889
ENSDART00000153252 ENSDART00000170972 ENSDART00000166420 ENSDART00000163079 |
ribonucleotide reductase M2 polypeptide |
|
chr19_-_47571456 Show fit | 2.48 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr11_+_25257022 Show fit | 2.33 |
ENSDART00000156052
|
tumor protein p53 inducible nuclear protein 2 |
|
chr19_-_47571797 Show fit | 2.31 |
ENSDART00000166180
ENSDART00000168134 |
ribonucleotide reductase M2 polypeptide |
|
chr11_-_25257045 Show fit | 2.30 |
ENSDART00000130477
|
snail family zinc finger 1a |
|
chr9_+_30090656 Show fit | 2.27 |
ENSDART00000102981
|
collagen, type VIII, alpha 1a |
|
chr16_-_27566552 Show fit | 1.76 |
ENSDART00000142102
|
zgc:153215 |
|
chr14_-_32965169 Show fit | 1.73 |
ENSDART00000114973
|
caudal type homeobox 4 |
|
chr1_-_53468160 Show fit | 1.70 |
ENSDART00000143349
|
zgc:66455 |
|
chr2_-_10877765 Show fit | 1.70 |
ENSDART00000100607
|
cell division cycle 7 homolog (S. cerevisiae) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 7.6 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.2 | 3.2 | GO:0008078 | mesodermal cell migration(GO:0008078) |
0.1 | 2.9 | GO:0006405 | RNA export from nucleus(GO:0006405) |
0.0 | 2.6 | GO:0033339 | pectoral fin development(GO:0033339) |
0.0 | 2.4 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
0.2 | 2.3 | GO:0014028 | notochord formation(GO:0014028) |
0.1 | 2.3 | GO:0010508 | positive regulation of autophagy(GO:0010508) |
0.2 | 2.0 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.2 | 1.9 | GO:0090385 | phagosome-lysosome fusion(GO:0090385) |
0.3 | 1.7 | GO:0007440 | foregut morphogenesis(GO:0007440) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0005581 | collagen trimer(GO:0005581) |
0.3 | 3.3 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
0.0 | 2.9 | GO:0005814 | centriole(GO:0005814) |
0.1 | 2.6 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 2.0 | GO:0016605 | PML body(GO:0016605) |
0.0 | 1.8 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
0.0 | 1.6 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.0 | 1.5 | GO:0008305 | integrin complex(GO:0008305) |
0.2 | 1.4 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.1 | 1.4 | GO:0000780 | condensed nuclear chromosome kinetochore(GO:0000778) condensed nuclear chromosome, centromeric region(GO:0000780) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 7.6 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.1 | 3.9 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.0 | 3.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.8 | 3.2 | GO:0051059 | NF-kappaB binding(GO:0051059) |
0.0 | 2.7 | GO:0043566 | structure-specific DNA binding(GO:0043566) |
0.1 | 2.6 | GO:0004698 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.0 | 2.5 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
0.0 | 2.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
0.0 | 2.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.0 | 1.8 | GO:0030674 | protein binding, bridging(GO:0030674) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.4 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 3.7 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 2.1 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.0 | 1.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 1.3 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 0.9 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 0.7 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.0 | 0.7 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 7.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 3.3 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.0 | 1.7 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.0 | 1.4 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 1.3 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 1.3 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.9 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.9 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.1 | 0.7 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |