PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa11b | dr11_v1_chr16_+_20904754_20904754 | 0.85 | 4.8e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_20194876 Show fit | 5.26 |
ENSDART00000122587
|
D-amino-acid oxidase, tandem duplicate 1 |
|
chr18_+_619619 Show fit | 5.05 |
ENSDART00000159846
|
protogenin homolog a (Gallus gallus) |
|
chr16_+_29509133 Show fit | 3.70 |
ENSDART00000112116
|
cathepsin S, ortholog2, tandem duplicate 1 |
|
chr3_-_26183699 Show fit | 3.35 |
ENSDART00000147517
ENSDART00000140731 |
si:ch211-11k18.4 |
|
chr19_-_47571456 Show fit | 3.19 |
ENSDART00000158071
ENSDART00000165841 |
ribonucleotide reductase M2 polypeptide |
|
chr20_-_29499363 Show fit | 3.15 |
ENSDART00000152889
ENSDART00000153252 ENSDART00000170972 ENSDART00000166420 ENSDART00000163079 |
ribonucleotide reductase M2 polypeptide |
|
chr19_-_47571797 Show fit | 3.09 |
ENSDART00000166180
ENSDART00000168134 |
ribonucleotide reductase M2 polypeptide |
|
chr9_-_48370645 Show fit | 2.94 |
ENSDART00000140185
|
collagen, type XXVIII, alpha 2a |
|
chr23_-_43718067 Show fit | 2.91 |
ENSDART00000015777
|
ATP-binding cassette, sub-family E (OABP), member 1 |
|
chr20_-_26491567 Show fit | 2.89 |
ENSDART00000147154
|
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 9.4 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 8.1 | GO:0042254 | ribosome biogenesis(GO:0042254) |
0.1 | 7.5 | GO:0050768 | negative regulation of neurogenesis(GO:0050768) |
0.0 | 5.6 | GO:0016197 | endosomal transport(GO:0016197) |
1.3 | 5.3 | GO:0006524 | alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) D-alanine family amino acid metabolic process(GO:0046144) D-alanine metabolic process(GO:0046436) D-alanine catabolic process(GO:0055130) |
0.1 | 4.8 | GO:0006406 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.1 | 4.3 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
0.0 | 4.3 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.2 | 3.8 | GO:0034315 | regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) |
0.1 | 3.2 | GO:0045454 | cell redox homeostasis(GO:0045454) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 75.3 | GO:0005634 | nucleus(GO:0005634) |
0.0 | 11.0 | GO:0005829 | cytosol(GO:0005829) |
0.0 | 8.1 | GO:0005694 | chromosome(GO:0005694) |
0.0 | 4.9 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 4.7 | GO:0000313 | organellar ribosome(GO:0000313) mitochondrial ribosome(GO:0005761) |
0.1 | 4.5 | GO:0000779 | condensed chromosome, centromeric region(GO:0000779) |
0.1 | 4.0 | GO:0005643 | nuclear pore(GO:0005643) |
0.0 | 3.8 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.0 | 3.7 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 3.4 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 42.7 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
0.0 | 11.9 | GO:0003723 | RNA binding(GO:0003723) |
1.3 | 9.4 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 6.8 | GO:0003682 | chromatin binding(GO:0003682) |
0.1 | 6.5 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.1 | 6.1 | GO:0043022 | ribosome binding(GO:0043022) |
1.3 | 5.3 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
0.0 | 4.9 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 4.4 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.4 | 3.8 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.1 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 3.8 | PID MYC PATHWAY | C-MYC pathway |
0.1 | 3.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 3.1 | PID ATM PATHWAY | ATM pathway |
0.1 | 2.7 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 2.5 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 2.4 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 2.4 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 2.4 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.2 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 9.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 5.0 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.1 | 3.6 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.4 | 3.2 | REACTOME EARLY PHASE OF HIV LIFE CYCLE | Genes involved in Early Phase of HIV Life Cycle |
0.1 | 3.1 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.1 | 3.0 | REACTOME ACTIVATION OF ATR IN RESPONSE TO REPLICATION STRESS | Genes involved in Activation of ATR in response to replication stress |
0.2 | 2.7 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 2.6 | REACTOME INHIBITION OF THE PROTEOLYTIC ACTIVITY OF APC C REQUIRED FOR THE ONSET OF ANAPHASE BY MITOTIC SPINDLE CHECKPOINT COMPONENTS | Genes involved in Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components |
0.2 | 2.3 | REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | Genes involved in Recruitment of NuMA to mitotic centrosomes |
0.2 | 2.2 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |