PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa13b | dr11_v1_chr16_+_20895904_20895904 | -0.53 | 2.1e-02 | Click! |
hoxa13a | dr11_v1_chr19_+_19729506_19729506 | 0.47 | 4.4e-02 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 9.8 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
1.2 | 4.6 | GO:0045041 | protein import into mitochondrial intermembrane space(GO:0045041) |
0.0 | 4.3 | GO:0000398 | RNA splicing, via transesterification reactions(GO:0000375) RNA splicing, via transesterification reactions with bulged adenosine as nucleophile(GO:0000377) mRNA splicing, via spliceosome(GO:0000398) |
0.0 | 4.2 | GO:0042254 | ribosome biogenesis(GO:0042254) |
0.0 | 3.6 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.1 | 3.2 | GO:0007098 | centrosome cycle(GO:0007098) |
0.3 | 2.6 | GO:0035372 | protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825) |
0.2 | 2.6 | GO:0042661 | regulation of mesodermal cell fate specification(GO:0042661) |
0.1 | 2.6 | GO:0006458 | 'de novo' protein folding(GO:0006458) 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085) |
0.0 | 2.6 | GO:0001756 | somitogenesis(GO:0001756) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 4.6 | GO:0000785 | chromatin(GO:0000785) |
0.4 | 3.7 | GO:0070652 | HAUS complex(GO:0070652) |
0.0 | 3.5 | GO:0005764 | lysosome(GO:0005764) |
0.0 | 3.3 | GO:0016607 | nuclear speck(GO:0016607) |
0.1 | 2.7 | GO:0030134 | ER to Golgi transport vesicle(GO:0030134) |
0.2 | 2.5 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.2 | 2.5 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.1 | 2.4 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.0 | 2.2 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 9.8 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.2 | 5.7 | GO:0051087 | chaperone binding(GO:0051087) |
0.0 | 3.7 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 2.9 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 2.6 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.1 | 2.5 | GO:0034062 | DNA-directed RNA polymerase activity(GO:0003899) RNA polymerase activity(GO:0034062) |
0.3 | 2.4 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
0.1 | 2.2 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
0.2 | 2.1 | GO:0043024 | ribosomal small subunit binding(GO:0043024) |
0.1 | 2.1 | GO:0030515 | snoRNA binding(GO:0030515) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.9 | PID E2F PATHWAY | E2F transcription factor network |
0.2 | 4.5 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 2.1 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.1 | 1.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.0 | 1.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 1.4 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 1.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.4 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 1.3 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.3 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 10.6 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 4.5 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 2.2 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.1 | 2.0 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.1 | 1.7 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.1 | 1.6 | REACTOME RNA POL III CHAIN ELONGATION | Genes involved in RNA Polymerase III Chain Elongation |
0.1 | 1.6 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.0 | 1.4 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.1 | 1.3 | REACTOME P38MAPK EVENTS | Genes involved in p38MAPK events |
0.1 | 1.3 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |