PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb1b | dr11_v1_chr12_+_27141140_27141140 | -0.75 | 2.4e-04 | Click! |
hoxc1a | dr11_v1_chr23_+_36178104_36178104 | -0.56 | 1.2e-02 | Click! |
hoxa1a | dr11_v1_chr19_+_19786117_19786213 | -0.55 | 1.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_27972474 Show fit | 27.85 |
ENSDART00000162753
|
|
|
chr25_-_36827491 Show fit | 21.30 |
ENSDART00000170941
|
|
|
chr17_+_40684 Show fit | 19.18 |
ENSDART00000164231
|
|
|
chr20_+_1088658 Show fit | 16.79 |
ENSDART00000162991
|
|
|
chr1_-_14258409 Show fit | 13.68 |
ENSDART00000079359
|
phosphodiesterase 5A, cGMP-specific, a |
|
chr13_-_51065048 Show fit | 11.83 |
ENSDART00000168085
|
|
|
chr12_-_25916530 Show fit | 9.89 |
ENSDART00000186386
|
synuclein, gamma b (breast cancer-specific protein 1) |
|
chr2_+_33541928 Show fit | 9.63 |
ENSDART00000162852
|
|
|
chr14_-_1565317 Show fit | 8.34 |
ENSDART00000169496
|
|
|
chr9_-_51370293 Show fit | 8.18 |
ENSDART00000084806
|
solute carrier family 4, sodium bicarbonate transporter, member 10b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.3 | GO:0016311 | dephosphorylation(GO:0016311) |
0.4 | 9.9 | GO:0071542 | dopaminergic neuron differentiation(GO:0071542) |
0.1 | 8.9 | GO:0035725 | sodium ion transmembrane transport(GO:0035725) |
0.4 | 8.2 | GO:0015701 | bicarbonate transport(GO:0015701) |
0.2 | 6.4 | GO:0006884 | cell volume homeostasis(GO:0006884) |
0.3 | 6.1 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.1 | 6.0 | GO:0006821 | chloride transport(GO:0006821) |
0.1 | 5.6 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
0.1 | 5.5 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
0.1 | 5.2 | GO:0032924 | activin receptor signaling pathway(GO:0032924) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 11.3 | GO:0043679 | axon terminus(GO:0043679) |
0.1 | 8.4 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 8.2 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.1 | 6.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 6.0 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 5.9 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.1 | 5.6 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 5.6 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.4 | 5.2 | GO:0048179 | activin receptor complex(GO:0048179) |
0.3 | 4.5 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 13.7 | GO:0047555 | 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555) |
3.3 | 9.9 | GO:1903136 | cuprous ion binding(GO:1903136) |
0.0 | 9.9 | GO:0019900 | kinase binding(GO:0019900) |
1.0 | 8.3 | GO:0004035 | alkaline phosphatase activity(GO:0004035) |
0.6 | 8.2 | GO:0008510 | sodium:bicarbonate symporter activity(GO:0008510) |
0.0 | 8.0 | GO:0005198 | structural molecule activity(GO:0005198) |
0.3 | 6.4 | GO:0015379 | cation:chloride symporter activity(GO:0015377) potassium:chloride symporter activity(GO:0015379) |
0.5 | 5.6 | GO:0030172 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.9 | 5.2 | GO:0016361 | activin receptor activity, type I(GO:0016361) |
1.0 | 5.1 | GO:0070573 | metallodipeptidase activity(GO:0070573) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.4 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.5 | 3.0 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
0.1 | 1.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.8 | 3.1 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |
0.3 | 3.0 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
0.3 | 2.4 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.1 | 1.4 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.2 | 1.2 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.1 | 1.2 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.1 | 1.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.1 | 0.8 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.0 | 0.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |