PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa2b | dr11_v1_chr16_+_20926673_20926673 | -0.91 | 8.4e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_+_1088658 Show fit | 10.51 |
ENSDART00000162991
|
|
|
chr12_-_11457625 Show fit | 10.00 |
ENSDART00000012318
|
HtrA serine peptidase 1b |
|
chr18_+_13792490 Show fit | 8.57 |
ENSDART00000136754
|
cadherin 13, H-cadherin (heart) |
|
chr9_-_22135420 Show fit | 8.01 |
ENSDART00000184959
|
crystallin, gamma M2d8 |
|
chr11_+_36243774 Show fit | 7.95 |
ENSDART00000023323
|
zgc:172270 |
|
chr9_-_22099536 Show fit | 7.33 |
ENSDART00000101923
|
|
|
chr7_-_35066457 Show fit | 6.85 |
ENSDART00000058067
|
zgc:112160 |
|
chr5_+_37837245 Show fit | 6.77 |
ENSDART00000171617
|
ependymin |
|
chr20_-_8443425 Show fit | 5.73 |
ENSDART00000083908
|
Dab, reelin signal transducer, homolog 1a (Drosophila) |
|
chr9_-_22232902 Show fit | 5.61 |
ENSDART00000101845
|
crystallin, gamma M2d5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 25.1 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.4 | 9.6 | GO:0006884 | cell volume homeostasis(GO:0006884) |
0.3 | 9.1 | GO:0007634 | optokinetic behavior(GO:0007634) |
0.2 | 8.7 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
1.1 | 8.6 | GO:1902262 | apoptotic process involved in patterning of blood vessels(GO:1902262) |
0.3 | 8.6 | GO:1901379 | regulation of potassium ion transmembrane transport(GO:1901379) |
0.2 | 8.5 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.1 | 8.4 | GO:0007160 | cell-matrix adhesion(GO:0007160) |
0.5 | 5.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
0.6 | 5.8 | GO:0044854 | membrane raft assembly(GO:0001765) plasma membrane raft assembly(GO:0044854) plasma membrane raft organization(GO:0044857) caveola assembly(GO:0070836) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 22.3 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 16.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.3 | 14.3 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.2 | 9.9 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 9.4 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.2 | 9.2 | GO:0016342 | catenin complex(GO:0016342) |
0.1 | 8.1 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 5.6 | GO:0005901 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.1 | 5.5 | GO:0043679 | axon terminus(GO:0043679) |
0.1 | 5.4 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 27.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 17.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 12.9 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
0.4 | 11.4 | GO:0005520 | insulin-like growth factor binding(GO:0005520) |
0.1 | 9.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 8.5 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 8.3 | GO:0045296 | cadherin binding(GO:0045296) |
0.0 | 8.2 | GO:0019900 | kinase binding(GO:0019900) |
0.4 | 7.9 | GO:0008239 | dipeptidyl-peptidase activity(GO:0008239) |
0.0 | 7.5 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 3.4 | PID TXA2PATHWAY | Thromboxane A2 receptor signaling |
0.1 | 2.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.1 | 2.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.1 | 2.4 | PID IFNG PATHWAY | IFN-gamma pathway |
0.1 | 2.3 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 2.2 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.1 | 2.1 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.9 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 1.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.6 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.4 | 8.6 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 4.9 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.6 | 4.5 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.6 | 3.9 | REACTOME OPSINS | Genes involved in Opsins |
0.1 | 3.6 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |
0.1 | 3.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 2.8 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.3 | 2.7 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.2 | 2.4 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |