PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa3a | dr11_v1_chr19_+_19775757_19775757 | -0.70 | 8.8e-04 | Click! |
hoxc3a | dr11_v1_chr23_+_36106790_36106790 | -0.68 | 1.4e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_22099536 Show fit | 4.50 |
ENSDART00000101923
|
|
|
chr11_+_30244356 Show fit | 4.46 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr9_-_22129788 Show fit | 4.17 |
ENSDART00000124272
ENSDART00000175417 |
crystallin, gamma M2d8 |
|
chr14_+_46313396 Show fit | 3.85 |
ENSDART00000047525
|
crystallin, beta A1, like 1 |
|
chr9_-_22310919 Show fit | 3.37 |
ENSDART00000108719
|
crystallin, gamma M2d10 |
|
chr3_-_50443607 Show fit | 3.09 |
ENSDART00000074036
|
recoverin a |
|
chr25_+_29160102 Show fit | 2.59 |
ENSDART00000162854
|
pyruvate kinase M1/2b |
|
chr2_+_50608099 Show fit | 2.54 |
ENSDART00000185805
ENSDART00000111135 |
neuronal differentiation 6b |
|
chr17_-_37395460 Show fit | 2.52 |
ENSDART00000148160
ENSDART00000075975 |
cysteine-rich protein 1 |
|
chr5_+_32206378 Show fit | 2.36 |
ENSDART00000126873
ENSDART00000051361 |
myosin, heavy polypeptide 2, fast muscle specific |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 4.1 | GO:0006096 | glycolytic process(GO:0006096) |
0.3 | 3.1 | GO:0036368 | cone photoresponse recovery(GO:0036368) |
0.8 | 2.5 | GO:0097237 | cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237) |
0.1 | 2.4 | GO:0014823 | response to activity(GO:0014823) |
0.3 | 2.3 | GO:0043092 | amino acid import(GO:0043090) L-amino acid import(GO:0043092) |
0.3 | 2.1 | GO:0042745 | circadian sleep/wake cycle process(GO:0022410) circadian sleep/wake cycle(GO:0042745) |
0.1 | 2.1 | GO:0045839 | negative regulation of mitotic nuclear division(GO:0045839) |
0.0 | 1.9 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
0.1 | 1.8 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 2.0 | GO:0030426 | growth cone(GO:0030426) |
0.1 | 1.9 | GO:0034361 | very-low-density lipoprotein particle(GO:0034361) |
0.0 | 1.6 | GO:0008305 | integrin complex(GO:0008305) |
0.1 | 1.5 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
0.0 | 1.5 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.2 | 1.4 | GO:0030891 | VCB complex(GO:0030891) |
0.0 | 1.4 | GO:0042470 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.0 | 1.4 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.3 | 1.3 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.5 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.7 | 4.1 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.0 | 3.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 2.4 | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors(GO:0016627) |
0.2 | 2.3 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.0 | 2.3 | GO:0005179 | hormone activity(GO:0005179) |
0.1 | 2.1 | GO:0005109 | frizzled binding(GO:0005109) |
0.5 | 1.9 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.2 | 1.8 | GO:0004457 | lactate dehydrogenase activity(GO:0004457) |
0.4 | 1.7 | GO:0008929 | triose-phosphate isomerase activity(GO:0004807) methylglyoxal synthase activity(GO:0008929) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 1.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.0 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 1.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.6 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
0.0 | 0.6 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.4 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 0.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.2 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.4 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 2.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 2.1 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 1.4 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.1 | 1.4 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.1 | 1.1 | REACTOME MITOCHONDRIAL FATTY ACID BETA OXIDATION | Genes involved in Mitochondrial Fatty Acid Beta-Oxidation |
0.1 | 1.1 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.1 | 1.0 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.0 | 1.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.1 | 0.9 | REACTOME LIGAND GATED ION CHANNEL TRANSPORT | Genes involved in Ligand-gated ion channel transport |