PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxa9b | dr11_v1_chr16_+_20915319_20915319 | -0.96 | 7.5e-11 | Click! |
hoxa9a | dr11_v1_chr19_+_19750101_19750223 | -0.96 | 1.3e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_46875310 Show fit | 10.72 |
ENSDART00000154442
|
immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3 |
|
chr8_+_6954984 Show fit | 9.59 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr7_+_39386982 Show fit | 9.08 |
ENSDART00000146702
|
troponin I type 2b (skeletal, fast), tandem duplicate 2 |
|
chr5_+_2815021 Show fit | 6.53 |
ENSDART00000020472
|
4-hydroxyphenylpyruvate dioxygenase a |
|
chr10_-_11385155 Show fit | 6.31 |
ENSDART00000064214
|
placenta-specific 8, tandem duplicate 1 |
|
chr20_+_6142433 Show fit | 6.25 |
ENSDART00000054084
ENSDART00000136986 |
transthyretin (prealbumin, amyloidosis type I) |
|
chr12_-_20362041 Show fit | 5.68 |
ENSDART00000184145
ENSDART00000105952 |
aquaporin 8a, tandem duplicate 2 |
|
chr2_-_3437862 Show fit | 5.62 |
ENSDART00000053012
|
cytochrome P450, family 8, subfamily B, polypeptide 1 |
|
chr8_+_47633438 Show fit | 5.49 |
ENSDART00000139096
|
si:ch211-251b21.1 |
|
chr9_-_22299412 Show fit | 5.15 |
ENSDART00000139101
|
crystallin, gamma M2d21 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 13.3 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 9.7 | GO:0007602 | phototransduction(GO:0007602) |
0.2 | 9.1 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 7.9 | GO:0035249 | synaptic transmission, glutamatergic(GO:0035249) |
0.1 | 7.4 | GO:0071466 | cellular response to xenobiotic stimulus(GO:0071466) |
1.1 | 6.5 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.6 | 6.3 | GO:0072337 | modified amino acid transport(GO:0072337) |
0.1 | 6.1 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
0.5 | 5.9 | GO:0097105 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.1 | 5.3 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 20.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.2 | 9.1 | GO:0005861 | troponin complex(GO:0005861) |
1.5 | 5.9 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
0.2 | 5.2 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 5.0 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 5.0 | GO:0005884 | actin filament(GO:0005884) |
0.0 | 4.8 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 4.6 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 4.5 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 3.7 | GO:0016324 | apical plasma membrane(GO:0016324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.7 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.2 | 9.1 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
2.2 | 6.5 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
1.6 | 6.3 | GO:0070324 | thyroid hormone binding(GO:0070324) |
0.2 | 6.0 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
1.5 | 5.9 | GO:0015277 | kainate selective glutamate receptor activity(GO:0015277) |
0.6 | 5.7 | GO:0015250 | water channel activity(GO:0015250) |
1.9 | 5.6 | GO:0008397 | sterol 12-alpha-hydroxylase activity(GO:0008397) |
0.1 | 5.3 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.2 | 5.2 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 4.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 3.5 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.0 | 2.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 1.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.0 | 1.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 1.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 1.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.8 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.7 | REACTOME AMYLOIDS | Genes involved in Amyloids |
1.1 | 5.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.8 | 4.8 | REACTOME OPSINS | Genes involved in Opsins |
0.1 | 4.5 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.1 | 2.9 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.2 | 2.3 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.3 | 1.9 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.0 | 1.6 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 1.6 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 1.3 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |