PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc10a | dr11_v1_chr23_+_35969228_35969228 | -0.37 | 1.2e-01 | Click! |
hoxb10a | dr11_v1_chr3_+_23669267_23669267 | 0.05 | 8.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_2223837 Show fit | 1.65 |
ENSDART00000101038
ENSDART00000129354 |
transmembrane inner ear |
|
chr14_+_30279391 Show fit | 1.49 |
ENSDART00000172794
|
fibrinogen-like 1 |
|
chr11_+_30244356 Show fit | 1.27 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr3_+_54047342 Show fit | 1.13 |
ENSDART00000178486
|
olfactomedin 2a |
|
chr4_+_37406676 Show fit | 1.11 |
ENSDART00000130981
|
si:ch73-134f24.1 |
|
chr23_+_27068225 Show fit | 1.09 |
ENSDART00000054238
|
major intrinsic protein of lens fiber a |
|
chr10_+_26612321 Show fit | 0.97 |
ENSDART00000134322
|
four and a half LIM domains 1b |
|
chr23_-_27571667 Show fit | 0.94 |
ENSDART00000008174
|
phosphofructokinase, muscle a |
|
chr20_+_26538137 Show fit | 0.91 |
ENSDART00000045397
|
syntaxin 11b, tandem duplicate 1 |
|
chr23_+_33934228 Show fit | 0.81 |
ENSDART00000134237
|
si:ch211-148l7.4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | GO:0060088 | auditory receptor cell stereocilium organization(GO:0060088) |
0.0 | 1.3 | GO:0099500 | synaptic vesicle fusion to presynaptic active zone membrane(GO:0031629) vesicle fusion to plasma membrane(GO:0099500) |
0.0 | 1.3 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.1 | 1.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 1.2 | GO:1903038 | negative regulation of T cell activation(GO:0050868) negative regulation of leukocyte cell-cell adhesion(GO:1903038) |
0.1 | 1.1 | GO:0006833 | water transport(GO:0006833) |
0.1 | 1.1 | GO:0043248 | proteasome assembly(GO:0043248) |
0.0 | 1.0 | GO:1990798 | pancreas regeneration(GO:1990798) |
0.0 | 1.0 | GO:0006413 | translational initiation(GO:0006413) |
0.1 | 0.9 | GO:2000576 | positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | GO:0008540 | proteasome regulatory particle, base subcomplex(GO:0008540) |
0.0 | 1.3 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 1.2 | GO:0030018 | Z disc(GO:0030018) |
0.1 | 0.9 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.1 | 0.9 | GO:0005868 | cytoplasmic dynein complex(GO:0005868) |
0.0 | 0.9 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
0.2 | 0.7 | GO:0002189 | ribose phosphate diphosphokinase complex(GO:0002189) |
0.1 | 0.7 | GO:1990726 | Lsm1-7-Pat1 complex(GO:1990726) |
0.1 | 0.7 | GO:0034045 | pre-autophagosomal structure membrane(GO:0034045) |
0.0 | 0.7 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 1.4 | GO:0008009 | chemokine activity(GO:0008009) |
0.0 | 1.4 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.2 | 1.2 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 1.2 | GO:0031593 | polyubiquitin binding(GO:0031593) |
0.0 | 1.1 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.1 | 1.0 | GO:0015185 | gamma-aminobutyric acid transmembrane transporter activity(GO:0015185) |
0.0 | 1.0 | GO:0044325 | ion channel binding(GO:0044325) |
0.1 | 0.9 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.0 | 0.9 | GO:0045505 | dynein intermediate chain binding(GO:0045505) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 0.4 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 0.2 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.1 | 0.9 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.0 | 0.8 | REACTOME PHOSPHORYLATION OF THE APC C | Genes involved in Phosphorylation of the APC/C |
0.0 | 0.8 | REACTOME AUTODEGRADATION OF CDH1 BY CDH1 APC C | Genes involved in Autodegradation of Cdh1 by Cdh1:APC/C |
0.0 | 0.7 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.0 | 0.7 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.0 | 0.5 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.0 | 0.4 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 0.4 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.0 | 0.3 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |