PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb13a | dr11_v1_chr3_+_23654233_23654233 | 0.50 | 2.7e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_15382704 Show fit | 2.19 |
ENSDART00000005313
|
zgc:85722 |
|
chr12_+_41697664 Show fit | 1.92 |
ENSDART00000162302
|
BCL2 interacting protein 3 |
|
chr4_-_4387012 Show fit | 1.39 |
ENSDART00000191836
|
Danio rerio U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1-like (LOC100331497), mRNA. |
|
chr10_-_14929392 Show fit | 1.32 |
ENSDART00000137430
|
SMAD family member 2 |
|
chr9_-_14683574 Show fit | 1.31 |
ENSDART00000144022
|
par-3 family cell polarity regulator beta b |
|
chr20_-_27733683 Show fit | 1.31 |
ENSDART00000103317
ENSDART00000138139 |
zgc:153157 |
|
chr20_-_25709247 Show fit | 1.29 |
ENSDART00000146711
|
si:dkeyp-117h8.2 |
|
chr1_+_52481332 Show fit | 1.25 |
ENSDART00000074231
|
claudin domain containing 1b |
|
chr2_+_45548890 Show fit | 1.22 |
ENSDART00000113994
|
fibronectin type III domain containing 7a |
|
chr8_+_25351863 Show fit | 1.17 |
ENSDART00000034092
|
deoxyribonuclease I-like 1-like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.9 | GO:0097345 | mitochondrial outer membrane permeabilization(GO:0097345) |
0.3 | 1.3 | GO:0051660 | establishment of centrosome localization(GO:0051660) |
0.2 | 1.3 | GO:0060282 | positive regulation of oocyte development(GO:0060282) |
0.1 | 1.3 | GO:0000737 | DNA catabolic process, endonucleolytic(GO:0000737) |
0.0 | 1.3 | GO:0006637 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
0.4 | 1.1 | GO:1902001 | regulation of plasma membrane long-chain fatty acid transport(GO:0010746) positive regulation of plasma membrane long-chain fatty acid transport(GO:0010747) plasma membrane long-chain fatty acid transport(GO:0015911) fatty acid transmembrane transport(GO:1902001) positive regulation of anion transmembrane transport(GO:1903961) regulation of fatty acid transport(GO:2000191) positive regulation of fatty acid transport(GO:2000193) |
0.1 | 1.1 | GO:1905150 | regulation of voltage-gated sodium channel activity(GO:1905150) |
0.1 | 1.0 | GO:0086010 | membrane depolarization during action potential(GO:0086010) |
0.0 | 1.0 | GO:0035622 | intrahepatic bile duct development(GO:0035622) |
0.0 | 0.8 | GO:0007634 | optokinetic behavior(GO:0007634) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0043296 | apical junction complex(GO:0043296) |
0.0 | 1.6 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.1 | 1.3 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.0 | 1.0 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.0 | 0.8 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.0 | 0.7 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.0 | 0.6 | GO:0030864 | cortical actin cytoskeleton(GO:0030864) |
0.1 | 0.4 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0004530 | deoxyribonuclease I activity(GO:0004530) |
0.1 | 1.3 | GO:0070411 | I-SMAD binding(GO:0070411) |
0.1 | 1.3 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.0 | 1.2 | GO:0005246 | calcium channel regulator activity(GO:0005246) |
0.1 | 1.1 | GO:0047676 | arachidonate-CoA ligase activity(GO:0047676) |
0.0 | 1.1 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
0.0 | 1.1 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
0.0 | 1.1 | GO:0005178 | integrin binding(GO:0005178) |
0.0 | 1.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.1 | 1.0 | GO:0008332 | low voltage-gated calcium channel activity(GO:0008332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 1.3 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 1.0 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 0.6 | PID CD40 PATHWAY | CD40/CD40L signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.1 | 1.1 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 1.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.0 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.6 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.0 | 0.6 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.0 | 0.5 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.0 | 0.4 | REACTOME DESTABILIZATION OF MRNA BY BRF1 | Genes involved in Destabilization of mRNA by Butyrate Response Factor 1 (BRF1) |
0.0 | 0.4 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.0 | 0.3 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |