PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb1a | dr11_v1_chr3_+_23768898_23768898 | -0.91 | 7.5e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_22003942 Show fit | 5.31 |
ENSDART00000091013
|
si:dkey-57a22.15 |
|
chr8_+_6954984 Show fit | 4.34 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr24_-_40009446 Show fit | 3.68 |
ENSDART00000087422
|
amine oxidase, copper containing 1 |
|
chr13_-_51065048 Show fit | 3.33 |
ENSDART00000168085
|
|
|
chr22_-_600016 Show fit | 2.47 |
ENSDART00000086434
|
transmembrane and coiled-coil domain family 2 |
|
chr7_-_13381129 Show fit | 2.41 |
ENSDART00000164326
|
si:ch73-119p20.1 |
|
chr12_-_25916530 Show fit | 2.36 |
ENSDART00000186386
|
synuclein, gamma b (breast cancer-specific protein 1) |
|
chr14_-_7888748 Show fit | 2.26 |
ENSDART00000166293
|
protein phosphatase 3, catalytic subunit, beta isozyme |
|
chr25_+_20215964 Show fit | 2.18 |
ENSDART00000139235
|
troponin T2d, cardiac |
|
chr8_-_39903803 Show fit | 2.07 |
ENSDART00000012391
|
calcium binding protein 1a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | GO:0006937 | regulation of muscle contraction(GO:0006937) |
0.0 | 5.4 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.7 | 3.7 | GO:0046677 | response to antibiotic(GO:0046677) |
0.2 | 3.3 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.1 | 2.5 | GO:0042982 | amyloid precursor protein metabolic process(GO:0042982) |
0.1 | 2.4 | GO:0030537 | larval locomotory behavior(GO:0008345) larval behavior(GO:0030537) |
0.2 | 2.3 | GO:0033173 | calcineurin-NFAT signaling cascade(GO:0033173) |
0.1 | 2.0 | GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome(GO:0098943) |
0.0 | 2.0 | GO:0016485 | protein processing(GO:0016485) |
0.2 | 1.9 | GO:0007084 | mitotic nuclear envelope reassembly(GO:0007084) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 3.0 | GO:0044295 | axonal growth cone(GO:0044295) |
0.1 | 2.8 | GO:0099634 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.1 | 2.4 | GO:0043679 | axon terminus(GO:0043679) |
0.4 | 2.3 | GO:0005955 | calcineurin complex(GO:0005955) |
0.0 | 2.0 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 2.0 | GO:0005581 | collagen trimer(GO:0005581) |
0.4 | 1.8 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.0 | 1.6 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 1.5 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.4 | 3.9 | GO:0031013 | troponin C binding(GO:0030172) troponin I binding(GO:0031013) |
0.7 | 3.7 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.1 | 2.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.8 | 2.4 | GO:1903136 | cuprous ion binding(GO:1903136) |
0.4 | 2.3 | GO:0033192 | calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192) |
0.3 | 2.0 | GO:0032422 | purine-rich negative regulatory element binding(GO:0032422) |
0.1 | 2.0 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.1 | 2.0 | GO:0048306 | calcium-dependent protein binding(GO:0048306) |
0.1 | 2.0 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 2.3 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 2.0 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 0.9 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.5 | PID EPHA FWDPATHWAY | EPHA forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 2.0 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
0.1 | 1.8 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.0 | 1.2 | REACTOME TRANSPORT OF GLUCOSE AND OTHER SUGARS BILE SALTS AND ORGANIC ACIDS METAL IONS AND AMINE COMPOUNDS | Genes involved in Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds |
0.0 | 0.9 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.0 | 0.6 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.3 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.0 | 0.2 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |