PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb3a | dr11_v1_chr3_+_23742868_23742868 | -0.70 | 8.9e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_3252263 Show fit | 1.52 |
ENSDART00000170632
|
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b |
|
chr8_-_23780334 Show fit | 1.07 |
ENSDART00000145179
ENSDART00000145894 |
zgc:195245 |
|
chr16_-_11798994 Show fit | 1.04 |
ENSDART00000135408
|
cornifelin |
|
chr23_+_6077503 Show fit | 0.99 |
ENSDART00000081714
ENSDART00000139834 |
myosin binding protein Ha |
|
chr22_+_7738966 Show fit | 0.97 |
ENSDART00000147073
|
si:ch73-44m9.5 |
|
chr5_-_30620625 Show fit | 0.97 |
ENSDART00000098273
|
transcobalamin like |
|
chr14_+_45675306 Show fit | 0.86 |
ENSDART00000105461
|
retinal outer segment membrane protein 1b |
|
chr3_-_31079186 Show fit | 0.84 |
ENSDART00000145636
ENSDART00000140569 |
elongin B elongin B |
|
chr12_-_20795867 Show fit | 0.75 |
ENSDART00000152835
ENSDART00000153424 |
NME/NM23 nucleoside diphosphate kinase 2a |
|
chr6_-_39344259 Show fit | 0.67 |
ENSDART00000104074
|
zgc:158846 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.0 | 0.8 | GO:0006368 | transcription elongation from RNA polymerase II promoter(GO:0006368) |
0.1 | 0.4 | GO:0070314 | G1 to G0 transition(GO:0070314) |
0.1 | 0.4 | GO:1901073 | chitin biosynthetic process(GO:0006031) glucosamine-containing compound biosynthetic process(GO:1901073) |
0.1 | 0.4 | GO:0006788 | heme oxidation(GO:0006788) |
0.1 | 0.4 | GO:0042984 | amyloid precursor protein biosynthetic process(GO:0042983) regulation of amyloid precursor protein biosynthetic process(GO:0042984) |
0.1 | 0.4 | GO:0003319 | cardioblast migration to the midline involved in heart rudiment formation(GO:0003319) |
0.0 | 0.4 | GO:0048798 | rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798) |
0.0 | 0.4 | GO:2000601 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.0 | 0.4 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0031680 | G-protein beta/gamma-subunit complex(GO:0031680) |
0.1 | 0.8 | GO:0030891 | VCB complex(GO:0030891) |
0.1 | 0.7 | GO:0045095 | keratin filament(GO:0045095) |
0.1 | 0.6 | GO:0035517 | PR-DUB complex(GO:0035517) |
0.0 | 0.4 | GO:0030428 | cell septum(GO:0030428) |
0.0 | 0.2 | GO:0070062 | extracellular exosome(GO:0070062) |
0.0 | 0.2 | GO:0048500 | signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500) |
0.0 | 0.2 | GO:0097225 | sperm midpiece(GO:0097225) |
0.0 | 0.2 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 0.1 | GO:0000931 | gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0031681 | G-protein beta-subunit binding(GO:0031681) |
0.0 | 0.8 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.1 | 0.6 | GO:0042975 | peroxisome proliferator activated receptor binding(GO:0042975) |
0.1 | 0.4 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
0.0 | 0.4 | GO:0004100 | chitin synthase activity(GO:0004100) |
0.0 | 0.4 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.0 | 0.4 | GO:0033691 | sialic acid binding(GO:0033691) |
0.0 | 0.4 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 0.3 | GO:1904121 | phosphatidylethanolamine transporter activity(GO:1904121) |
0.1 | 0.3 | GO:0033765 | 3-oxo-5-alpha-steroid 4-dehydrogenase activity(GO:0003865) steroid dehydrogenase activity, acting on the CH-CH group of donors(GO:0033765) enone reductase activity(GO:0035671) cholestenone 5-alpha-reductase activity(GO:0047751) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.4 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.0 | 0.3 | PID REELIN PATHWAY | Reelin signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.4 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 0.3 | REACTOME ANDROGEN BIOSYNTHESIS | Genes involved in Androgen biosynthesis |
0.0 | 0.3 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.0 | 0.3 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.0 | 0.3 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.2 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 0.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |