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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxb4a

Z-value: 0.16

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Transcription factors associated with hoxb4a

Gene Symbol Gene ID Gene Info
hoxb4a
ENSDARG00000013533 homeobox B4a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb4adr11_v1_chr3_+_23710839_237108390.174.8e-01Click!

Activity profile of hoxb4a motif

Sorted Z-values of hoxb4a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_-_29072162 0.29 ENSDART00000169269
arid3b
AT rich interactive domain 3B (BRIGHT-like)
chr19_+_14059349 0.28 ENSDART00000166230
tpbga
trophoblast glycoprotein a
chr21_+_20901505 0.26 ENSDART00000132741
c7b
complement component 7b
chr12_+_28854963 0.25 ENSDART00000153227
nfe2l1b
nuclear factor, erythroid 2-like 1b
chr12_-_26430507 0.23 ENSDART00000153214
synpo2lb
synaptopodin 2-like b
chr13_+_18321140 0.19 ENSDART00000180947
eif4e1c
eukaryotic translation initiation factor 4E family member 1c
chr17_+_27434626 0.19 ENSDART00000052446
vgll2b
vestigial-like family member 2b
chr21_-_20328375 0.18 ENSDART00000079593
slc26a1
solute carrier family 26 (anion exchanger), member 1
chr20_-_26491567 0.17 ENSDART00000147154
mthfd1l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
chr3_+_27027781 0.17 ENSDART00000065495
emp2
epithelial membrane protein 2
chr17_-_114121 0.17 ENSDART00000172408
ENSDART00000157784
arhgap11a
Rho GTPase activating protein 11A
chr12_-_20616160 0.15 ENSDART00000105362
snx11
sorting nexin 11
chr9_-_15789526 0.15 ENSDART00000141318
si:dkey-103d23.3
si:dkey-103d23.3
chr2_+_44972720 0.13 ENSDART00000075146
alg3
asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
chr3_+_33300522 0.12 ENSDART00000114023
hspb9
heat shock protein, alpha-crystallin-related, 9
chr17_-_23241393 0.09 ENSDART00000190697
AL935174.4

chr10_-_20445549 0.09 ENSDART00000064613
loxl2a
lysyl oxidase-like 2a
chr13_-_33207367 0.08 ENSDART00000146138
ENSDART00000109667
ENSDART00000182741
trip11
thyroid hormone receptor interactor 11
chr5_+_32924669 0.08 ENSDART00000085219
lmo4a
LIM domain only 4a
chr19_+_20177208 0.08 ENSDART00000166807
tra2a
transformer 2 alpha homolog
chr6_-_57635577 0.08 ENSDART00000168708
cbfa2t2
core-binding factor, runt domain, alpha subunit 2; translocated to, 2
chr23_+_27756984 0.07 ENSDART00000137103
kmt2d
lysine (K)-specific methyltransferase 2D
chr11_-_13341483 0.07 ENSDART00000164978
mast3b
microtubule associated serine/threonine kinase 3b
chr21_+_22423286 0.07 ENSDART00000133190
capslb
calcyphosine-like b
chr9_+_16449398 0.07 ENSDART00000006787
epha3
eph receptor A3
chr4_+_43408004 0.07 ENSDART00000150476
si:dkeyp-53e4.2
si:dkeyp-53e4.2
chr14_+_46274611 0.07 ENSDART00000134363
cabp2b
calcium binding protein 2b
chr2_+_27010439 0.06 ENSDART00000030547
cdh7a
cadherin 7a
chr6_-_43047774 0.06 ENSDART00000161722
glyctk
glycerate kinase
chr23_+_384850 0.06 ENSDART00000114000
zgc:101663
zgc:101663
chr23_+_13814978 0.06 ENSDART00000090864
lmod3
leiomodin 3 (fetal)
chr20_+_51479263 0.06 ENSDART00000148798
tlr5a
toll-like receptor 5a
chr19_+_816208 0.06 ENSDART00000093304
nrm
nurim
chr15_+_25489406 0.05 ENSDART00000162482
zgc:152863
zgc:152863
chr11_-_13341051 0.05 ENSDART00000121872
mast3b
microtubule associated serine/threonine kinase 3b
chr6_-_28345002 0.05 ENSDART00000158955
si:busm1-105l16.2
si:busm1-105l16.2
chr7_+_13988075 0.05 ENSDART00000186812
furina
furin (paired basic amino acid cleaving enzyme) a
chr7_-_6268373 0.04 ENSDART00000183990
si:ch211-220f21.2
si:ch211-220f21.2
chr17_-_8727699 0.04 ENSDART00000049236
ENSDART00000149505
ENSDART00000148619
ENSDART00000149668
ENSDART00000148827
ctbp2a
C-terminal binding protein 2a
chr16_-_32672883 0.04 ENSDART00000124515
ENSDART00000190920
ENSDART00000188776
pnisr
PNN-interacting serine/arginine-rich protein
chr12_+_28854410 0.04 ENSDART00000152991
nfe2l1b
nuclear factor, erythroid 2-like 1b
chr20_-_32188897 0.03 ENSDART00000133887
si:ch211-51a19.5
si:ch211-51a19.5
chr1_-_47431453 0.03 ENSDART00000101104
gja5b
gap junction protein, alpha 5b
chr15_-_26552652 0.03 ENSDART00000152336
serpinf2b
serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2b
chr2_-_54039293 0.03 ENSDART00000166013
abhd8a
abhydrolase domain containing 8a
chr17_-_19626357 0.03 ENSDART00000011432
reep3a
receptor accessory protein 3a
chr5_-_64103863 0.03 ENSDART00000135014
ENSDART00000083684
pappab
pregnancy-associated plasma protein A, pappalysin 1b
chr3_+_23752150 0.03 ENSDART00000146636
hoxb2a
homeobox B2a
chr18_-_12957451 0.03 ENSDART00000140403
srgap1a
SLIT-ROBO Rho GTPase activating protein 1a
chr1_+_1712140 0.02 ENSDART00000081047
atp1a1a.1
ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1
chr25_+_5972690 0.02 ENSDART00000067517
si:ch211-11i22.4
si:ch211-11i22.4
chr2_+_23731194 0.02 ENSDART00000155747
slc22a13a
solute carrier family 22 member 13a
chr6_-_49655879 0.02 ENSDART00000191594
apcdd1l
adenomatosis polyposis coli down-regulated 1-like
chr5_+_20112032 0.02 ENSDART00000130554
isg15
ISG15 ubiquitin-like modifier
chr13_-_22961605 0.02 ENSDART00000143112
ENSDART00000057641
tspan15
tetraspanin 15
chr3_-_51109286 0.02 ENSDART00000172010
si:ch211-148f13.1
si:ch211-148f13.1
chr23_-_3721444 0.01 ENSDART00000141682
nudt3a
nudix (nucleoside diphosphate linked moiety X)-type motif 3a
chr7_+_27317174 0.01 ENSDART00000193058
sox6
SRY (sex determining region Y)-box 6
chr19_+_28256076 0.01 ENSDART00000133354
irx4b
iroquois homeobox 4b
chr3_+_19687217 0.01 ENSDART00000141937
tlk2
tousled-like kinase 2
chr6_+_29791164 0.01 ENSDART00000017424
ptmaa
prothymosin, alpha a
chr6_-_29105727 0.01 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr7_+_35268880 0.01 ENSDART00000182231
dpep2
dipeptidase 2
chr15_+_17251191 0.01 ENSDART00000156587
si:ch73-223p23.2
si:ch73-223p23.2
chr11_+_18205766 0.01 ENSDART00000175559
tmcc1b
transmembrane and coiled-coil domain family 1b
chr15_-_15968883 0.01 ENSDART00000166583
ENSDART00000154042
synrg
synergin, gamma
chr6_+_18367388 0.00 ENSDART00000163394
dgke
diacylglycerol kinase, epsilon
chr18_-_25401002 0.00 ENSDART00000055567
gnrhr4
gonadotropin releasing hormone receptor 4
chr20_+_51478939 0.00 ENSDART00000149758
tlr5a
toll-like receptor 5a
chr4_-_17257435 0.00 ENSDART00000131973
lrmp
lymphoid-restricted membrane protein
chr13_+_30912385 0.00 ENSDART00000182642
drgx
dorsal root ganglia homeobox

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb4a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.1 0.2 GO:0003071 renal system process involved in regulation of blood volume(GO:0001977) renal system process involved in regulation of systemic arterial blood pressure(GO:0003071) regulation of glomerular filtration(GO:0003093)
0.0 0.2 GO:0019532 oxalate transport(GO:0019532)
0.0 0.1 GO:0007509 mesoderm migration involved in gastrulation(GO:0007509)
0.0 0.1 GO:1902455 negative regulation of stem cell population maintenance(GO:1902455)
0.0 0.1 GO:0034146 toll-like receptor 5 signaling pathway(GO:0034146)
0.0 0.2 GO:0035999 tetrahydrofolate interconversion(GO:0035999)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0005579 membrane attack complex(GO:0005579)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000033 alpha-1,3-mannosyltransferase activity(GO:0000033)
0.0 0.2 GO:0004329 formate-tetrahydrofolate ligase activity(GO:0004329)
0.0 0.1 GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)
0.0 0.1 GO:0008887 glycerate kinase activity(GO:0008887)
0.0 0.2 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)