PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb6a | dr11_v1_chr3_+_23703704_23703704 | -0.50 | 3.1e-02 | Click! |
hoxb6b | dr11_v1_chr12_+_27127139_27127139 | 0.13 | 5.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_30244356 Show fit | 11.44 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr1_+_17676745 Show fit | 10.52 |
ENSDART00000030665
|
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 |
|
chr1_+_44439661 Show fit | 9.98 |
ENSDART00000100309
|
crystallin, beta B1, like 2 |
|
chr25_+_31227747 Show fit | 9.44 |
ENSDART00000033872
|
troponin I type 2a (skeletal, fast), tandem duplicate 1 |
|
chr21_+_7582036 Show fit | 8.91 |
ENSDART00000135485
ENSDART00000027268 |
orthopedia homeobox a |
|
chr5_-_29643930 Show fit | 8.83 |
ENSDART00000161250
|
glutamate receptor, ionotropic, N-methyl D-aspartate 1b |
|
chr21_-_42007213 Show fit | 8.52 |
ENSDART00000188804
ENSDART00000092821 ENSDART00000165743 |
gamma-aminobutyric acid (GABA) A receptor, gamma 2 |
|
chr5_-_44829719 Show fit | 8.36 |
ENSDART00000019104
|
fructose-1,6-bisphosphatase 2 |
|
chr8_-_49431939 Show fit | 8.08 |
ENSDART00000011453
ENSDART00000088240 ENSDART00000114173 |
synaptophysin b |
|
chr5_-_30615901 Show fit | 8.06 |
ENSDART00000147769
|
si:ch211-117m20.5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 60.6 | GO:0007601 | visual perception(GO:0007601) |
0.2 | 39.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.0 | 22.6 | GO:0007186 | G-protein coupled receptor signaling pathway(GO:0007186) |
0.2 | 22.2 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
1.8 | 21.9 | GO:0002031 | G-protein coupled receptor internalization(GO:0002031) |
4.0 | 19.9 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.0 | 17.3 | GO:0006811 | ion transport(GO:0006811) |
0.4 | 16.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.3 | 16.7 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.7 | 16.2 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 121.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.1 | 107.9 | GO:0005576 | extracellular region(GO:0005576) |
0.9 | 40.6 | GO:0005861 | troponin complex(GO:0005861) |
1.1 | 37.2 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.8 | 34.0 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.2 | 24.7 | GO:0014069 | postsynaptic density(GO:0014069) |
0.4 | 23.4 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.1 | 21.4 | GO:0043005 | neuron projection(GO:0043005) |
0.1 | 19.8 | GO:0030424 | axon(GO:0030424) |
0.3 | 18.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 61.7 | GO:0005509 | calcium ion binding(GO:0005509) |
2.1 | 32.1 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
0.1 | 32.0 | GO:0051015 | actin filament binding(GO:0051015) |
0.7 | 29.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
2.0 | 27.7 | GO:0022851 | benzodiazepine receptor activity(GO:0008503) GABA-gated chloride ion channel activity(GO:0022851) |
0.4 | 24.0 | GO:0019905 | syntaxin binding(GO:0019905) |
0.1 | 21.6 | GO:0001664 | G-protein coupled receptor binding(GO:0001664) |
0.1 | 19.8 | GO:0015293 | symporter activity(GO:0015293) |
0.2 | 17.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.9 | 16.8 | GO:0098882 | structural constituent of presynaptic active zone(GO:0098882) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 22.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
1.0 | 21.7 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.2 | 7.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.2 | 7.1 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 6.7 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.5 | 5.9 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.6 | 5.1 | SA FAS SIGNALING | The TNF-type receptor Fas induces apoptosis on ligand binding. |
0.2 | 5.0 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 4.8 | ST G ALPHA I PATHWAY | G alpha i Pathway |
0.1 | 3.7 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 30.1 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
3.6 | 14.2 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.4 | 10.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.4 | 9.7 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.2 | 8.6 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
0.4 | 8.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.2 | 7.8 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.2 | 7.7 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.5 | 7.3 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.5 | 6.5 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |