PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb8b | dr11_v1_chr12_+_27117609_27117609 | -0.44 | 6.2e-02 | Click! |
hoxb8a | dr11_v1_chr3_+_23687909_23687909 | -0.38 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_17676745 Show fit | 2.24 |
ENSDART00000030665
|
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 |
|
chr4_-_4387012 Show fit | 1.95 |
ENSDART00000191836
|
Danio rerio U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1-like (LOC100331497), mRNA. |
|
chr9_+_42066030 Show fit | 1.83 |
ENSDART00000185311
ENSDART00000015267 |
poly(rC) binding protein 3 |
|
chr18_-_38088099 Show fit | 1.70 |
ENSDART00000146120
|
leucine zipper protein 2 |
|
chr22_+_18389271 Show fit | 1.68 |
ENSDART00000088270
|
YjeF N-terminal domain containing 3 |
|
chr12_+_39685485 Show fit | 1.67 |
ENSDART00000163403
|
|
|
chr19_-_3123963 Show fit | 1.55 |
ENSDART00000122816
|
si:ch211-80h18.1 |
|
chr20_-_29420713 Show fit | 1.54 |
ENSDART00000147464
|
ryanodine receptor 3 |
|
chr18_+_783936 Show fit | 1.54 |
ENSDART00000193357
|
ribonuclease P and MRP subunit p25, b |
|
chr18_+_13792490 Show fit | 1.47 |
ENSDART00000136754
|
cadherin 13, H-cadherin (heart) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.2 | GO:0015867 | intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544) |
0.4 | 1.7 | GO:0010874 | regulation of cholesterol efflux(GO:0010874) |
0.3 | 1.5 | GO:0003210 | cardiac atrium formation(GO:0003210) |
0.2 | 1.5 | GO:1902262 | apoptotic process involved in patterning of blood vessels(GO:1902262) |
0.2 | 1.5 | GO:0001682 | tRNA 5'-leader removal(GO:0001682) |
0.0 | 1.5 | GO:0051209 | release of sequestered calcium ion into cytosol(GO:0051209) |
0.1 | 1.4 | GO:0060088 | auditory receptor cell stereocilium organization(GO:0060088) |
0.2 | 1.3 | GO:0060334 | regulation of response to interferon-gamma(GO:0060330) regulation of interferon-gamma-mediated signaling pathway(GO:0060334) |
0.2 | 1.2 | GO:0046677 | response to antibiotic(GO:0046677) |
0.2 | 1.2 | GO:0035332 | positive regulation of hippo signaling(GO:0035332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 1.8 | GO:0034705 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.2 | 1.5 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.2 | 1.5 | GO:0000172 | ribonuclease MRP complex(GO:0000172) |
0.0 | 1.4 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
0.0 | 1.4 | GO:0034703 | cation channel complex(GO:0034703) |
0.0 | 1.4 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.2 | 1.2 | GO:0016586 | RSC complex(GO:0016586) |
0.0 | 1.2 | GO:0005871 | kinesin complex(GO:0005871) |
0.0 | 1.2 | GO:0030018 | Z disc(GO:0030018) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 2.2 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
0.1 | 1.7 | GO:0016854 | racemase and epimerase activity(GO:0016854) |
0.0 | 1.7 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 1.5 | GO:0048763 | ryanodine-sensitive calcium-release channel activity(GO:0005219) calcium-induced calcium release activity(GO:0048763) |
0.1 | 1.5 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.0 | 1.4 | GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935) |
0.0 | 1.4 | GO:0045296 | cadherin binding(GO:0045296) |
0.2 | 1.2 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.1 | 1.2 | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates(GO:0016838) |
0.1 | 1.2 | GO:0031433 | telethonin binding(GO:0031433) FATZ binding(GO:0051373) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 0.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.0 | 0.2 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | REACTOME INTERACTIONS OF VPR WITH HOST CELLULAR PROTEINS | Genes involved in Interactions of Vpr with host cellular proteins |
0.1 | 1.5 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 1.1 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.0 | 0.8 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.0 | 0.6 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.6 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.4 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.0 | 0.4 | REACTOME THROMBIN SIGNALLING THROUGH PROTEINASE ACTIVATED RECEPTORS PARS | Genes involved in Thrombin signalling through proteinase activated receptors (PARs) |
0.0 | 0.3 | REACTOME REGULATION OF WATER BALANCE BY RENAL AQUAPORINS | Genes involved in Regulation of Water Balance by Renal Aquaporins |
0.0 | 0.2 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |