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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxb9a

Z-value: 0.79

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Transcription factors associated with hoxb9a

Gene Symbol Gene ID Gene Info
hoxb9a
ENSDARG00000056023 homeobox B9a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb9adr11_v1_chr3_+_23677351_236773510.871.7e-06Click!

Activity profile of hoxb9a motif

Sorted Z-values of hoxb9a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_-_29499363 2.89 ENSDART00000152889
ENSDART00000153252
ENSDART00000170972
ENSDART00000166420
ENSDART00000163079
rrm2
ribonucleotide reductase M2 polypeptide
chr19_-_47571456 2.50 ENSDART00000158071
ENSDART00000165841
rrm2
ribonucleotide reductase M2 polypeptide
chr5_-_40510397 2.10 ENSDART00000146237
ENSDART00000051065
fsta
follistatin a
chr13_-_49802194 2.06 ENSDART00000148722
b3galnt2
beta-1,3-N-acetylgalactosaminyltransferase 2
chr14_+_14841685 1.98 ENSDART00000158291
ENSDART00000162039
slbp
stem-loop binding protein
chr21_-_19918286 1.88 ENSDART00000180816
ppp1r3b
protein phosphatase 1, regulatory subunit 3B
chr16_+_38940758 1.88 ENSDART00000102482
ENSDART00000136215
eny2
enhancer of yellow 2 homolog (Drosophila)
chr3_+_6469754 1.83 ENSDART00000185809
NUP85 (1 of many)
nucleoporin 85
chr23_+_7379728 1.81 ENSDART00000012194
gata5
GATA binding protein 5
chr21_-_11970199 1.77 ENSDART00000114524
nop56
NOP56 ribonucleoprotein homolog
chr4_-_56898328 1.60 ENSDART00000169189
si:dkey-269o24.6
si:dkey-269o24.6
chr13_+_36585399 1.60 ENSDART00000030211
gmfb
glia maturation factor, beta
chr9_-_48370645 1.59 ENSDART00000140185
col28a2a
collagen, type XXVIII, alpha 2a
chr13_+_43400443 1.57 ENSDART00000084321
dact2
dishevelled-binding antagonist of beta-catenin 2
chr8_+_4697764 1.47 ENSDART00000064197
cldn5a
claudin 5a
chr3_+_36646054 1.47 ENSDART00000170013
ENSDART00000159948
gspt1l
G1 to S phase transition 1, like
chr13_+_22295905 1.45 ENSDART00000180133
ENSDART00000181125
usp54a
ubiquitin specific peptidase 54a
chr2_+_19785540 1.36 ENSDART00000149789
ptbp2b
polypyrimidine tract binding protein 2b
chr23_+_36122058 1.28 ENSDART00000184448
hoxc3a
homeobox C3a
chr6_+_35362225 1.24 ENSDART00000133783
ENSDART00000102483
rgs4
regulator of G protein signaling 4
chr6_+_13083146 1.24 ENSDART00000172158
l3hypdh
trans-L-3-hydroxyproline dehydratase
chr12_-_33817114 1.24 ENSDART00000161265
twnk
twinkle mtDNA helicase
chr14_-_41388178 1.23 ENSDART00000124532
ENSDART00000125016
ENSDART00000169247
cstf2
cleavage stimulation factor, 3' pre-RNA, subunit 2
chr4_+_42556555 1.22 ENSDART00000168536
znf1053
zinc finger protein 1053
chr25_+_7299488 1.22 ENSDART00000184836
hmg20a
high mobility group 20A
chr3_-_31804481 1.20 ENSDART00000028270
gfap
glial fibrillary acidic protein
chr2_-_40135942 1.18 ENSDART00000176951
ENSDART00000098632
ENSDART00000148563
ENSDART00000149895
epha4a
eph receptor A4a
chr8_-_50888806 1.18 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr20_-_2641233 1.16 ENSDART00000145335
ENSDART00000133121
bub1
BUB1 mitotic checkpoint serine/threonine kinase
chr16_-_27566552 1.16 ENSDART00000142102
zgc:153215
zgc:153215
chr7_-_59589547 1.16 ENSDART00000008554
ENSDART00000101731
larp7
La ribonucleoprotein domain family, member 7
chr7_+_36041509 1.13 ENSDART00000162850
irx3a
iroquois homeobox 3a
chr22_+_10606573 1.13 ENSDART00000192638
rad54l2
RAD54 like 2
chr9_+_32860345 1.13 ENSDART00000121751
si:dkey-145p14.5
si:dkey-145p14.5
chr24_+_29352039 1.12 ENSDART00000101641
prmt6
protein arginine methyltransferase 6
chr24_+_39105051 1.12 ENSDART00000115297
mss51
MSS51 mitochondrial translational activator
chr6_+_49551614 1.11 ENSDART00000022581
rab22a
RAB22A, member RAS oncogene family
chr4_-_71108793 1.07 ENSDART00000189856
si:dkeyp-80d11.1
si:dkeyp-80d11.1
chr15_+_21254800 1.05 ENSDART00000142902
usf1
upstream transcription factor 1
chr16_-_7793457 1.04 ENSDART00000113483
trim71
tripartite motif containing 71, E3 ubiquitin protein ligase
chr18_+_35173859 1.03 ENSDART00000127379
ENSDART00000098292
cfap45
cilia and flagella associated protein 45
chr19_+_19747430 1.01 ENSDART00000166129
hoxa9a
homeobox A9a
chr1_+_56463494 1.00 ENSDART00000097964
zgc:171452
zgc:171452
chr16_+_32559821 0.99 ENSDART00000093250
pou3f2b
POU class 3 homeobox 2b
chr9_+_32859967 0.97 ENSDART00000168992
si:dkey-145p14.5
si:dkey-145p14.5
chr5_+_24087035 0.97 ENSDART00000183644
tp53
tumor protein p53
chr14_+_4276394 0.96 ENSDART00000038301
gnpda2
glucosamine-6-phosphate deaminase 2
chr25_-_12923482 0.95 ENSDART00000161754
CR450808.1

chr21_-_39024754 0.93 ENSDART00000056878
traf4b
tnf receptor-associated factor 4b
chr6_+_39536596 0.92 ENSDART00000185742
CU467856.3

chr16_-_43679611 0.92 ENSDART00000123585
LO017721.1

chr5_-_36597612 0.91 ENSDART00000031270
ENSDART00000122098
rhogc
ras homolog gene family, member Gc
chr9_-_3400727 0.88 ENSDART00000183979
ENSDART00000111386
dlx2a
distal-less homeobox 2a
chr5_-_31856681 0.86 ENSDART00000187817
pkn3
protein kinase N3
chr20_-_34670236 0.85 ENSDART00000033325
slc25a24
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
chr17_+_24320861 0.85 ENSDART00000179858
otx1
orthodenticle homeobox 1
chr5_-_31857345 0.84 ENSDART00000112546
pkn3
protein kinase N3
chr22_+_2512154 0.84 ENSDART00000097363
zgc:173726
zgc:173726
chr22_-_4644484 0.83 ENSDART00000167748
fbn2b
fibrillin 2b
chr18_+_35173683 0.80 ENSDART00000192545
cfap45
cilia and flagella associated protein 45
chr4_-_59709185 0.80 ENSDART00000136825
si:dkey-149m13.5
si:dkey-149m13.5
chr20_+_27087539 0.79 ENSDART00000062094
tmem251
transmembrane protein 251
chr23_-_21215311 0.78 ENSDART00000112424
megf6a
multiple EGF-like-domains 6a
chr5_-_54424019 0.77 ENSDART00000169270
ENSDART00000164067
coq4
coenzyme Q4 homolog (S. cerevisiae)
chr10_-_3332362 0.77 ENSDART00000007577
ENSDART00000055140
tor4aa
torsin family 4, member Aa
chr14_+_24840669 0.74 ENSDART00000106039
arhgef37
Rho guanine nucleotide exchange factor (GEF) 37
chr10_+_16069987 0.73 ENSDART00000043936
megf10
multiple EGF-like-domains 10
chr12_+_27022517 0.73 ENSDART00000152975
msl1b
male-specific lethal 1 homolog b (Drosophila)
chr18_-_48296793 0.72 ENSDART00000032184
ENSDART00000193076
CABZ01069595.1

chr11_+_25560632 0.70 ENSDART00000033914
mbd1b
methyl-CpG binding domain protein 1b
chr4_+_59711338 0.68 ENSDART00000150849
si:dkey-149m13.4
si:dkey-149m13.4
chr22_+_15343953 0.67 ENSDART00000045682
rrp36
ribosomal RNA processing 36
chr2_-_30668580 0.66 ENSDART00000087270
ctnnd2b
catenin (cadherin-associated protein), delta 2b
chr10_-_2788668 0.66 ENSDART00000131749
ENSDART00000124356
ENSDART00000085031
ash2l
ash2 (absent, small, or homeotic)-like (Drosophila)
chr2_+_16696052 0.66 ENSDART00000022356
ENSDART00000164329
ppp1r7
protein phosphatase 1, regulatory (inhibitor) subunit 7
chr23_+_20931030 0.66 ENSDART00000167014
pax7b
paired box 7b
chr4_-_50788075 0.65 ENSDART00000150302
znf1045
zinc finger protein 1045
chr23_+_30736895 0.65 ENSDART00000042944
asxl1
additional sex combs like transcriptional regulator 1
chr22_+_21255860 0.65 ENSDART00000134893
cpamd8
C3 and PZP-like, alpha-2-macroglobulin domain containing 8
chr25_+_32755485 0.64 ENSDART00000162188
etfa
electron-transfer-flavoprotein, alpha polypeptide
chr17_-_21057617 0.64 ENSDART00000148095
ENSDART00000048853
ube2d1a
ubiquitin-conjugating enzyme E2D 1a
chr3_+_33745014 0.64 ENSDART00000159966
nacc1a
nucleus accumbens associated 1, BEN and BTB (POZ) domain containing a
chr7_+_61480296 0.63 ENSDART00000083255
adam19a
ADAM metallopeptidase domain 19a
chr18_-_17075098 0.63 ENSDART00000042496
ENSDART00000192284
ENSDART00000180307
tango6
transport and golgi organization 6 homolog (Drosophila)
chr16_-_21915223 0.62 ENSDART00000170634
setdb1b
SET domain, bifurcated 1b
chr16_+_28578352 0.61 ENSDART00000149306
nmt2
N-myristoyltransferase 2
chr14_+_22447662 0.61 ENSDART00000161776
sowahab
sosondowah ankyrin repeat domain family member Ab
chr15_+_14826966 0.61 ENSDART00000157912
ENSDART00000171133
or130-1
odorant receptor, family H, subfamily 130, member 1
chr5_+_72194444 0.60 ENSDART00000165436
ddx54
DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
chr4_+_45504938 0.58 ENSDART00000145958
si:dkey-256i11.2
si:dkey-256i11.2
chr22_-_10605045 0.57 ENSDART00000184812
bap1
BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
chr2_+_13462305 0.56 ENSDART00000149309
ENSDART00000080900
cfap57
cilia and flagella associated protein 57
chr4_-_64142389 0.56 ENSDART00000172126
BX914205.3

chr21_-_32781612 0.55 ENSDART00000031028
cnot6a
CCR4-NOT transcription complex, subunit 6a
chr1_+_45663727 0.54 ENSDART00000038574
ENSDART00000141144
ENSDART00000149565
trappc5
trafficking protein particle complex 5
chr10_+_44700103 0.54 ENSDART00000165999
scarb1
scavenger receptor class B, member 1
chr16_-_55028740 0.54 ENSDART00000156368
ENSDART00000161704
zgc:114181
zgc:114181
chr6_+_43015916 0.53 ENSDART00000064888
tcta
T cell leukemia translocation altered
chr4_-_59159690 0.52 ENSDART00000164706
znf1149
zinc finger protein 1149
chr7_-_18508815 0.52 ENSDART00000173539
rgs12a
regulator of G protein signaling 12a
chr18_+_8320165 0.52 ENSDART00000092053
chkb
choline kinase beta
chr6_-_54107269 0.49 ENSDART00000190017
hyal2a
hyaluronoglucosaminidase 2a
chr10_-_1625080 0.49 ENSDART00000137285
nup155
nucleoporin 155
chr25_+_28823952 0.48 ENSDART00000067072
nfybb
nuclear transcription factor Y, beta b
chr10_-_22127942 0.48 ENSDART00000133374
ponzr2
plac8 onzin related protein 2
chr2_+_15586632 0.46 ENSDART00000164903
BX510342.1

chr10_+_40660772 0.46 ENSDART00000148007
taar19l
trace amine associated receptor 19l
chr17_-_50059664 0.45 ENSDART00000193940
FO704836.1

chr14_+_15495088 0.44 ENSDART00000165765
ENSDART00000188577
si:dkey-203a12.6
si:dkey-203a12.6
chr8_+_45004666 0.44 ENSDART00000145348
si:ch211-163b2.4
si:ch211-163b2.4
chr20_-_31496679 0.43 ENSDART00000153437
ENSDART00000153193
sash1a
SAM and SH3 domain containing 1a
chr23_+_39606108 0.42 ENSDART00000109464
g0s2
G0/G1 switch 2
chr2_+_2967255 0.42 ENSDART00000167649
ENSDART00000166449
pik3r3a
phosphoinositide-3-kinase, regulatory subunit 3a (gamma)
chr17_-_50050453 0.41 ENSDART00000182057
zgc:100951
zgc:100951
chr13_-_11578304 0.41 ENSDART00000171145
si:ch211-132e22.4
si:ch211-132e22.4
chr3_-_49554912 0.40 ENSDART00000159392
CR847534.1

chr10_+_506538 0.40 ENSDART00000141713
si:ch211-242f23.3
si:ch211-242f23.3
chr21_+_25236297 0.40 ENSDART00000112783
tmem45b
transmembrane protein 45B
chr8_-_3312384 0.40 ENSDART00000035965
fut9b
fucosyltransferase 9b
chr13_+_31286076 0.40 ENSDART00000142725
gdf10a
growth differentiation factor 10a
chr20_-_31497300 0.39 ENSDART00000046841
sash1a
SAM and SH3 domain containing 1a
chr7_+_33152723 0.39 ENSDART00000132658
si:ch211-194p6.10
si:ch211-194p6.10
chr24_-_3426620 0.39 ENSDART00000184346
nck1b
NCK adaptor protein 1b
chr4_+_39368978 0.38 ENSDART00000160640
si:dkey-261o4.1
si:dkey-261o4.1
chr15_-_21014015 0.38 ENSDART00000144991
si:ch211-212c13.10
si:ch211-212c13.10
chr8_+_45004997 0.37 ENSDART00000159779
si:ch211-163b2.4
si:ch211-163b2.4
chr4_-_30712588 0.37 ENSDART00000142393
si:dkey-16p19.5
si:dkey-16p19.5
chr2_+_23039041 0.37 ENSDART00000056921
csnk1g2a
casein kinase 1, gamma 2a
chr4_-_61920018 0.37 ENSDART00000164832
znf1056
zinc finger protein 1056
chr8_+_3431671 0.36 ENSDART00000017850
ctu1
cytosolic thiouridylase subunit 1 homolog (S. pombe)
chr25_+_22572296 0.36 ENSDART00000152096
stra6
stimulated by retinoic acid 6
chr1_+_26105141 0.35 ENSDART00000102379
ENSDART00000127154
toporsa
topoisomerase I binding, arginine/serine-rich a
chr16_-_17586883 0.35 ENSDART00000017142
m6pr
mannose-6-phosphate receptor (cation dependent)
chr19_-_7033636 0.35 ENSDART00000122815
ENSDART00000123443
ENSDART00000124094
daxx
death-domain associated protein
chr3_+_24190207 0.33 ENSDART00000034762
prr15la
proline rich 15-like a
chr5_+_58687541 0.32 ENSDART00000083015
ENSDART00000181902
ccdc84
coiled-coil domain containing 84
chr14_+_5861435 0.32 ENSDART00000041279
ENSDART00000147341
tubb4b
tubulin, beta 4B class IVb
chr15_-_19772372 0.32 ENSDART00000152729
picalmb
phosphatidylinositol binding clathrin assembly protein b
chr17_-_43666166 0.31 ENSDART00000077990
egr2a
early growth response 2a
chr11_+_44503774 0.31 ENSDART00000169295
ero1b
endoplasmic reticulum oxidoreductase beta
chr3_-_53091946 0.30 ENSDART00000187297
lpar2a
lysophosphatidic acid receptor 2a
chr25_-_29134000 0.28 ENSDART00000172027
ENSDART00000190447
parp6b
poly (ADP-ribose) polymerase family, member 6b
chr24_-_9997948 0.26 ENSDART00000136274
si:ch211-146l10.7
si:ch211-146l10.7
chr4_-_73299225 0.25 ENSDART00000174178
ENSDART00000174198
si:cabz01021430.2
si:cabz01021430.2
chr1_-_56556326 0.25 ENSDART00000188760
CABZ01059408.1

chr16_-_16225260 0.25 ENSDART00000165790
gra
granulito
chr22_+_2751887 0.25 ENSDART00000133652
si:dkey-20i20.11
si:dkey-20i20.11
chr12_-_43428542 0.24 ENSDART00000192266
ptprea
protein tyrosine phosphatase, receptor type, E, a
chr1_-_9485939 0.24 ENSDART00000157814
micall2b
mical-like 2b
chr5_-_37881345 0.24 ENSDART00000084819
arhgap35b
Rho GTPase activating protein 35b
chr10_-_40484531 0.24 ENSDART00000142464
ENSDART00000180318
taar20z
trace amine associated receptor 20z
chr13_-_2283176 0.23 ENSDART00000158462
lrrc1
leucine rich repeat containing 1
chr2_+_19578079 0.23 ENSDART00000144413
pimr50
Pim proto-oncogene, serine/threonine kinase, related 50
chr10_+_40598791 0.22 ENSDART00000131895
taar17a
trace amine associated receptor 17a
chr11_-_18253111 0.22 ENSDART00000125984
mustn1b
musculoskeletal, embryonic nuclear protein 1b
chr21_-_27251112 0.22 ENSDART00000137667
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr10_+_40321067 0.21 ENSDART00000109816
gltpb
glycolipid transfer protein b
chr3_-_32958505 0.21 ENSDART00000147374
ENSDART00000136919
casp6l1
caspase 6, apoptosis-related cysteine peptidase, like 1
chr10_+_26612321 0.21 ENSDART00000134322
fhl1b
four and a half LIM domains 1b
chr17_+_33375469 0.20 ENSDART00000032827
zgc:162964
zgc:162964
chr17_-_30652738 0.20 ENSDART00000154960
sh3yl1
SH3 and SYLF domain containing 1
chr10_-_42923385 0.19 ENSDART00000076731
ACOT12
acyl-CoA thioesterase 12
chr24_-_32025637 0.19 ENSDART00000180448
ENSDART00000159034
rsu1
Ras suppressor protein 1
chr4_-_77300601 0.19 ENSDART00000163015
ENSDART00000174015
slco1f2
solute carrier organic anion transporter family, member 1F2
chr4_-_11122638 0.19 ENSDART00000150600
si:dkey-21h14.10
si:dkey-21h14.10
chr4_-_55641422 0.18 ENSDART00000165178
znf1074
zinc finger protein 1074
chr16_-_27138478 0.17 ENSDART00000147438
tmem245
transmembrane protein 245
chr10_+_40768203 0.17 ENSDART00000171994
ENSDART00000140343
taar19d
trace amine associated receptor 19d
chr17_+_15788100 0.17 ENSDART00000027667
rragd
ras-related GTP binding D
chr2_-_45663945 0.17 ENSDART00000075080
prpf38b
pre-mRNA processing factor 38B
chr6_-_3982783 0.15 ENSDART00000171944
slc25a12
solute carrier family 25 (aspartate/glutamate carrier), member 12
chr11_+_25560072 0.15 ENSDART00000124131
ENSDART00000147179
mbd1b
methyl-CpG binding domain protein 1b
chr4_+_33574463 0.15 ENSDART00000150255
si:dkey-84h14.1
si:dkey-84h14.1
chr24_-_21819010 0.14 ENSDART00000091096
CR352265.1

chr25_+_16080181 0.14 ENSDART00000061753
far1
fatty acyl CoA reductase 1
chr11_+_42585138 0.13 ENSDART00000019008
asb14a
ankyrin repeat and SOCS box containing 14a
chr19_+_19652439 0.13 ENSDART00000165934
hibadha
3-hydroxyisobutyrate dehydrogenase a
chr15_+_29727799 0.13 ENSDART00000182006
zgc:153372
zgc:153372
chr7_+_29512673 0.13 ENSDART00000173895
si:dkey-182o15.5
si:dkey-182o15.5
chr21_-_39931285 0.12 ENSDART00000180010
ENSDART00000024407
tmigd1
transmembrane and immunoglobulin domain containing 1
chr20_+_46202188 0.11 ENSDART00000100523
taar13c
trace amine associated receptor 13c
chr13_+_27329556 0.10 ENSDART00000140085
mb21d1
Mab-21 domain containing 1
chr23_+_18722715 0.10 ENSDART00000137438
myh7bb
myosin, heavy chain 7B, cardiac muscle, beta b
chr11_+_12175162 0.09 ENSDART00000125446
si:ch211-156l18.7
si:ch211-156l18.7
chr11_-_38492269 0.09 ENSDART00000065613
elk4
ELK4, ETS-domain protein
chr15_-_16704417 0.08 ENSDART00000155163
caln1
calneuron 1
chr19_-_24218942 0.07 ENSDART00000189198
BX547993.2

chr15_+_11381532 0.06 ENSDART00000124172
si:ch73-321d9.2
si:ch73-321d9.2
chr24_-_17029374 0.06 ENSDART00000039267
ptgdsb.1
prostaglandin D2 synthase b, tandem duplicate 1
chr11_+_24314148 0.06 ENSDART00000171491
rem1
RAS (RAD and GEM)-like GTP-binding 1
chr17_-_44249720 0.06 ENSDART00000156648
otx2b
orthodenticle homeobox 2b
chr11_-_25538341 0.05 ENSDART00000171560
si:dkey-245f22.3
si:dkey-245f22.3
chr7_+_27317174 0.05 ENSDART00000193058
sox6
SRY (sex determining region Y)-box 6
chr8_-_38159805 0.04 ENSDART00000112331
ENSDART00000180006
adgra2
adhesion G protein-coupled receptor A2
chr11_-_38533505 0.04 ENSDART00000113894
slc45a3
solute carrier family 45, member 3
chr15_+_31515976 0.04 ENSDART00000156471
tex26
testis expressed 26
chr2_-_44283554 0.03 ENSDART00000184684
mpz
myelin protein zero
chr10_+_40583930 0.01 ENSDART00000134523
taar18j
trace amine associated receptor 18j
chr5_-_32336613 0.01 ENSDART00000139732
dab2
Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb9a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.9 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.5 5.4 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.5 1.8 GO:0048618 post-embryonic foregut morphogenesis(GO:0048618)
0.4 1.2 GO:1900182 positive regulation of protein localization to nucleus(GO:1900182) regulation of protein localization to Cajal body(GO:1904869) positive regulation of protein localization to Cajal body(GO:1904871)
0.3 3.7 GO:0032926 negative regulation of activin receptor signaling pathway(GO:0032926)
0.3 1.0 GO:0043525 regulation of transposition, RNA-mediated(GO:0010525) negative regulation of transposition, RNA-mediated(GO:0010526) transposition, RNA-mediated(GO:0032197) positive regulation of neuron apoptotic process(GO:0043525) positive regulation of neuron death(GO:1901216)
0.3 1.0 GO:0006043 glucosamine metabolic process(GO:0006041) glucosamine catabolic process(GO:0006043)
0.3 1.5 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.3 2.0 GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398)
0.3 1.1 GO:0034969 histone arginine methylation(GO:0034969)
0.3 0.8 GO:0060958 cell proliferation involved in heart valve morphogenesis(GO:0003249) regulation of cell proliferation involved in heart valve morphogenesis(GO:0003250) endocardial cell development(GO:0060958) cell proliferation involved in heart valve development(GO:2000793)
0.3 2.4 GO:0016578 histone deubiquitination(GO:0016578)
0.2 0.9 GO:0007250 activation of NF-kappaB-inducing kinase activity(GO:0007250)
0.2 1.0 GO:0010586 miRNA metabolic process(GO:0010586)
0.2 1.2 GO:0098787 mRNA cleavage involved in mRNA processing(GO:0098787) pre-mRNA cleavage required for polyadenylation(GO:0098789)
0.2 1.2 GO:0003404 optic vesicle morphogenesis(GO:0003404)
0.2 1.2 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.2 0.5 GO:0036228 protein targeting to nuclear inner membrane(GO:0036228) protein localization to nuclear envelope(GO:0090435)
0.2 0.6 GO:0006499 N-terminal protein myristoylation(GO:0006499) N-terminal peptidyl-glycine N-myristoylation(GO:0018008) protein myristoylation(GO:0018377)
0.1 0.9 GO:0035881 amacrine cell differentiation(GO:0035881)
0.1 1.2 GO:0006264 mitochondrial DNA replication(GO:0006264)
0.1 0.7 GO:0050938 regulation of xanthophore differentiation(GO:0050938)
0.1 1.0 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.1 0.6 GO:0070584 mitochondrion morphogenesis(GO:0070584)
0.1 0.3 GO:0043654 recognition of apoptotic cell(GO:0043654)
0.1 0.7 GO:0043984 histone H4-K16 acetylation(GO:0043984)
0.1 0.4 GO:0071939 vitamin A transport(GO:0071938) vitamin A import(GO:0071939)
0.1 1.6 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315)
0.1 0.4 GO:0032447 tRNA wobble position uridine thiolation(GO:0002143) protein urmylation(GO:0032447)
0.1 0.3 GO:0045647 negative regulation of erythrocyte differentiation(GO:0045647)
0.1 2.1 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.1 0.9 GO:0003406 retinal pigment epithelium development(GO:0003406)
0.1 0.3 GO:0034975 protein folding in endoplasmic reticulum(GO:0034975)
0.0 2.5 GO:0001885 endothelial cell development(GO:0001885)
0.0 0.6 GO:0031937 methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.0 1.2 GO:0035338 long-chain fatty-acyl-CoA biosynthetic process(GO:0035338)
0.0 0.2 GO:0035988 chondrocyte proliferation(GO:0035988)
0.0 0.1 GO:0018872 arsonoacetate metabolic process(GO:0018872)
0.0 0.8 GO:0006744 ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744) quinone biosynthetic process(GO:1901663)
0.0 0.5 GO:0030214 hyaluronan catabolic process(GO:0030214)
0.0 1.6 GO:0043277 apoptotic cell clearance(GO:0043277)
0.0 0.4 GO:0043550 regulation of lipid kinase activity(GO:0043550) regulation of phosphatidylinositol 3-kinase activity(GO:0043551)
0.0 0.4 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.2 GO:0035627 ceramide transport(GO:0035627)
0.0 0.7 GO:0051568 histone H3-K4 methylation(GO:0051568)
0.0 0.5 GO:0030316 osteoclast differentiation(GO:0030316)
0.0 0.2 GO:0045947 negative regulation of translational initiation(GO:0045947)
0.0 0.7 GO:0000469 cleavage involved in rRNA processing(GO:0000469)
0.0 0.7 GO:0060997 dendritic spine morphogenesis(GO:0060997) dendritic spine organization(GO:0097061)
0.0 0.1 GO:0050911 detection of chemical stimulus involved in sensory perception of smell(GO:0050911)
0.0 0.1 GO:0006574 valine catabolic process(GO:0006574)
0.0 1.8 GO:0031018 endocrine pancreas development(GO:0031018)
0.0 0.2 GO:0015813 acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490)
0.0 0.5 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.0 0.9 GO:0071277 cellular response to calcium ion(GO:0071277)
0.0 0.1 GO:1901842 regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.0 0.3 GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane(GO:0016185)
0.0 0.4 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.1 GO:0035336 long-chain fatty-acyl-CoA metabolic process(GO:0035336)
0.0 0.2 GO:0043252 sodium-independent organic anion transport(GO:0043252)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.9 GO:0070390 transcription export complex 2(GO:0070390)
0.3 1.8 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.3 1.5 GO:0018444 translation release factor complex(GO:0018444)
0.2 0.5 GO:1990072 TRAPPIII protein complex(GO:1990072)
0.2 1.2 GO:0035517 PR-DUB complex(GO:0035517)
0.1 0.5 GO:0044611 nuclear pore inner ring(GO:0044611)
0.1 1.9 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.1 0.7 GO:0072487 MSL complex(GO:0072487)
0.1 0.8 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.1 1.2 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.1 1.2 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778) condensed nuclear chromosome, centromeric region(GO:0000780)
0.0 1.7 GO:0097610 cleavage furrow(GO:0032154) cell surface furrow(GO:0097610)
0.0 0.5 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.7 GO:0048188 Set1C/COMPASS complex(GO:0048188)
0.0 0.2 GO:0034448 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0 0.3 GO:0098833 presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894)
0.0 0.5 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.7 GO:0030686 90S preribosome(GO:0030686)
0.0 1.6 GO:0005581 collagen trimer(GO:0005581)
0.0 1.0 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.0 2.3 GO:0005769 early endosome(GO:0005769)
0.0 1.6 GO:0005770 late endosome(GO:0005770)
0.0 1.3 GO:0005882 intermediate filament(GO:0005882)
0.0 0.0 GO:1990909 Wnt signalosome(GO:1990909)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 5.4 GO:0016728 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.3 1.0 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.2 1.1 GO:0008469 histone-arginine N-methyltransferase activity(GO:0008469)
0.2 1.6 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.2 0.6 GO:0004379 glycylpeptide N-tetradecanoyltransferase activity(GO:0004379)
0.1 1.5 GO:0008079 translation release factor activity(GO:0003747) translation termination factor activity(GO:0008079)
0.1 1.2 GO:0017070 U6 snRNA binding(GO:0017070)
0.1 0.6 GO:0042975 peroxisome proliferator activated receptor binding(GO:0042975)
0.1 1.9 GO:2001069 glycogen binding(GO:2001069)
0.1 0.5 GO:0033906 hyaluronoglucuronidase activity(GO:0033906)
0.1 1.2 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.1 2.1 GO:0048185 activin binding(GO:0048185)
0.1 1.0 GO:0035198 miRNA binding(GO:0035198)
0.1 2.0 GO:0036002 pre-mRNA binding(GO:0036002)
0.1 1.8 GO:0030515 snoRNA binding(GO:0030515)
0.1 1.6 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 1.2 GO:0005005 transmembrane-ephrin receptor activity(GO:0005005)
0.1 1.7 GO:0004698 protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698)
0.1 0.5 GO:0016805 dipeptidase activity(GO:0016805)
0.1 0.3 GO:0030169 low-density lipoprotein particle binding(GO:0030169)
0.1 0.4 GO:0034632 retinol transporter activity(GO:0034632)
0.0 2.1 GO:0008376 acetylgalactosaminyltransferase activity(GO:0008376)
0.0 0.2 GO:0035620 ceramide transporter activity(GO:0035620) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.0 0.1 GO:0030792 arsenite methyltransferase activity(GO:0030791) methylarsonite methyltransferase activity(GO:0030792)
0.0 0.2 GO:0008190 eukaryotic initiation factor 4E binding(GO:0008190)
0.0 0.5 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 0.9 GO:0005164 tumor necrosis factor receptor binding(GO:0005164)
0.0 0.4 GO:0005537 mannose binding(GO:0005537)
0.0 0.5 GO:0070492 oligosaccharide binding(GO:0070492)
0.0 0.3 GO:0005545 1-phosphatidylinositol binding(GO:0005545)
0.0 0.3 GO:0016864 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 2.6 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.1 GO:0004984 olfactory receptor activity(GO:0004984)
0.0 0.3 GO:0070915 lysophosphatidic acid receptor activity(GO:0070915)
0.0 0.1 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.0 1.0 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.5 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 1.2 GO:0016836 hydro-lyase activity(GO:0016836)
0.0 1.2 GO:0003678 DNA helicase activity(GO:0003678)
0.0 1.1 GO:0001594 trace-amine receptor activity(GO:0001594)
0.0 0.6 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.0 1.9 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.4 GO:0046935 1-phosphatidylinositol-3-kinase regulator activity(GO:0046935)
0.0 0.2 GO:0015347 sodium-independent organic anion transmembrane transporter activity(GO:0015347)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.1 5.4 PID E2F PATHWAY E2F transcription factor network
0.0 1.1 PID P38 ALPHA BETA DOWNSTREAM PATHWAY Signaling mediated by p38-alpha and p38-beta
0.0 0.6 PID ERB GENOMIC PATHWAY Validated nuclear estrogen receptor beta network
0.0 1.2 PID AURORA B PATHWAY Aurora B signaling
0.0 1.9 PID TGFBR PATHWAY TGF-beta receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 5.4 REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
0.2 2.0 REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
0.1 1.0 REACTOME ACTIVATION OF BH3 ONLY PROTEINS Genes involved in Activation of BH3-only proteins
0.1 1.2 REACTOME PROCESSING OF CAPPED INTRONLESS PRE MRNA Genes involved in Processing of Capped Intronless Pre-mRNA
0.1 0.6 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 1.8 REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS Genes involved in Association of TriC/CCT with target proteins during biosynthesis
0.0 0.5 REACTOME SYNTHESIS OF PE Genes involved in Synthesis of PE
0.0 0.3 REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC Genes involved in Formation of tubulin folding intermediates by CCT/TriC
0.0 1.2 REACTOME NUCLEAR SIGNALING BY ERBB4 Genes involved in Nuclear signaling by ERBB4
0.0 1.2 REACTOME G ALPHA Z SIGNALLING EVENTS Genes involved in G alpha (z) signalling events
0.0 0.3 REACTOME HDL MEDIATED LIPID TRANSPORT Genes involved in HDL-mediated lipid transport
0.0 0.5 REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript
0.0 1.2 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 1.2 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.2 REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS Genes involved in Cell-extracellular matrix interactions
0.0 0.4 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.6 REACTOME RESPIRATORY ELECTRON TRANSPORT Genes involved in Respiratory electron transport