PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxb9a | dr11_v1_chr3_+_23677351_23677351 | 0.87 | 1.7e-06 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.4 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.3 | 3.7 | GO:0032926 | negative regulation of activin receptor signaling pathway(GO:0032926) |
0.0 | 2.5 | GO:0001885 | endothelial cell development(GO:0001885) |
0.3 | 2.4 | GO:0016578 | histone deubiquitination(GO:0016578) |
0.1 | 2.1 | GO:0006493 | protein O-linked glycosylation(GO:0006493) |
0.3 | 2.0 | GO:0006398 | mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398) |
0.6 | 1.9 | GO:0005981 | regulation of glycogen catabolic process(GO:0005981) |
0.5 | 1.8 | GO:0048618 | post-embryonic foregut morphogenesis(GO:0048618) |
0.0 | 1.8 | GO:0031018 | endocrine pancreas development(GO:0031018) |
0.1 | 1.6 | GO:0034315 | regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.3 | GO:0005769 | early endosome(GO:0005769) |
0.4 | 1.9 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.1 | 1.9 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.3 | 1.8 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.0 | 1.7 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 1.6 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 1.6 | GO:0005770 | late endosome(GO:0005770) |
0.3 | 1.5 | GO:0018444 | translation release factor complex(GO:0018444) |
0.0 | 1.3 | GO:0005882 | intermediate filament(GO:0005882) |
0.2 | 1.2 | GO:0035517 | PR-DUB complex(GO:0035517) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 5.4 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.0 | 2.6 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 2.1 | GO:0048185 | activin binding(GO:0048185) |
0.0 | 2.1 | GO:0008376 | acetylgalactosaminyltransferase activity(GO:0008376) |
0.1 | 2.0 | GO:0036002 | pre-mRNA binding(GO:0036002) |
0.1 | 1.9 | GO:2001069 | glycogen binding(GO:2001069) |
0.0 | 1.9 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.1 | 1.8 | GO:0030515 | snoRNA binding(GO:0030515) |
0.1 | 1.7 | GO:0004698 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.2 | 1.6 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.4 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 1.9 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 1.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.1 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.1 | 1.0 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.4 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 2.0 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.0 | 1.8 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.1 | 1.2 | REACTOME PROCESSING OF CAPPED INTRONLESS PRE MRNA | Genes involved in Processing of Capped Intronless Pre-mRNA |
0.0 | 1.2 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.0 | 1.2 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.0 | 1.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 1.0 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.1 | 0.6 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |