PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc11a | dr11_v1_chr23_+_36074798_36074880 | -0.34 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr23_+_27068225 Show fit | 3.47 |
ENSDART00000054238
|
major intrinsic protein of lens fiber a |
|
chr1_+_44439661 Show fit | 3.03 |
ENSDART00000100309
|
crystallin, beta B1, like 2 |
|
chr2_+_2223837 Show fit | 2.80 |
ENSDART00000101038
ENSDART00000129354 |
transmembrane inner ear |
|
chr25_+_29161609 Show fit | 2.59 |
ENSDART00000180752
|
pyruvate kinase M1/2b |
|
chr23_-_27571667 Show fit | 2.29 |
ENSDART00000008174
|
phosphofructokinase, muscle a |
|
chr3_+_25154078 Show fit | 2.19 |
ENSDART00000156973
|
si:ch211-256m1.8 |
|
chr17_-_12389259 Show fit | 2.07 |
ENSDART00000185724
|
synaptosomal-associated protein, 25b |
|
chr10_-_29903165 Show fit | 2.05 |
ENSDART00000078800
|
lens intrinsic membrane protein 2.1 |
|
chr11_+_30244356 Show fit | 2.03 |
ENSDART00000036050
ENSDART00000150080 |
retinoschisin 1a |
|
chr6_-_60147517 Show fit | 1.85 |
ENSDART00000083453
|
solute carrier family 32 (GABA vesicular transporter), member 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.1 | GO:0006833 | water transport(GO:0006833) |
0.1 | 2.8 | GO:0060088 | auditory receptor cell stereocilium organization(GO:0060088) |
0.1 | 2.6 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 2.6 | GO:0006096 | glycolytic process(GO:0006096) |
0.2 | 2.3 | GO:0061718 | glucose catabolic process(GO:0006007) NADH regeneration(GO:0006735) glycolytic process through fructose-6-phosphate(GO:0061615) glycolytic process through glucose-6-phosphate(GO:0061620) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.0 | 2.3 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.2 | 2.2 | GO:0016540 | protein autoprocessing(GO:0016540) |
0.5 | 2.1 | GO:0018171 | peptidyl-cysteine oxidation(GO:0018171) |
0.1 | 2.1 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
0.2 | 1.9 | GO:0098700 | neurotransmitter loading into synaptic vesicle(GO:0098700) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 2.6 | GO:0005861 | troponin complex(GO:0005861) |
0.2 | 2.3 | GO:0005945 | 6-phosphofructokinase complex(GO:0005945) |
0.3 | 2.1 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.1 | 1.9 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 1.5 | GO:0044306 | axon terminus(GO:0043679) neuron projection terminus(GO:0044306) |
0.0 | 1.3 | GO:0030027 | lamellipodium(GO:0030027) |
0.0 | 0.9 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 0.8 | GO:0016442 | RISC complex(GO:0016442) RNAi effector complex(GO:0031332) |
0.0 | 0.8 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.4 | 3.5 | GO:0015250 | water channel activity(GO:0015250) |
0.4 | 2.6 | GO:0004743 | pyruvate kinase activity(GO:0004743) |
0.1 | 2.4 | GO:0005246 | calcium channel regulator activity(GO:0005246) |
0.2 | 2.3 | GO:0003872 | 6-phosphofructokinase activity(GO:0003872) |
0.4 | 2.2 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
0.3 | 2.1 | GO:0016972 | thiol oxidase activity(GO:0016972) |
0.1 | 2.1 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 2.0 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 1.9 | GO:0015295 | solute:proton symporter activity(GO:0015295) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.8 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 1.1 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 0.9 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.0 | 0.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.0 | 0.4 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.0 | 0.4 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 0.2 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.0 | 0.1 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |