PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc11b | dr11_v1_chr11_+_2180072_2180072 | 0.37 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_12588044 Show fit | 1.79 |
ENSDART00000047896
|
solute carrier family 15 (oligopeptide transporter), member 1b |
|
chr24_-_40009446 Show fit | 1.46 |
ENSDART00000087422
|
amine oxidase, copper containing 1 |
|
chr7_-_26457208 Show fit | 0.95 |
ENSDART00000173519
|
zgc:172079 |
|
chr1_+_52481332 Show fit | 0.84 |
ENSDART00000074231
|
claudin domain containing 1b |
|
chr17_+_27456804 Show fit | 0.74 |
ENSDART00000017756
ENSDART00000181461 ENSDART00000180178 |
cathepsin L.1 |
|
chr24_+_40529346 Show fit | 0.68 |
ENSDART00000168548
|
|
|
chr1_-_9249943 Show fit | 0.68 |
ENSDART00000055011
|
zgc:136472 |
|
chr3_+_49074008 Show fit | 0.67 |
ENSDART00000168864
|
zgc:112146 |
|
chr22_-_31517300 Show fit | 0.65 |
ENSDART00000164799
|
solute carrier family 6 (neurotransmitter transporter), member 6b |
|
chr21_+_11401247 Show fit | 0.64 |
ENSDART00000143952
|
carboxyl ester lipase, tandem duplicate 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.8 | GO:0006857 | oligopeptide transport(GO:0006857) |
0.3 | 1.5 | GO:0046677 | response to antibiotic(GO:0046677) |
0.0 | 0.9 | GO:0046847 | filopodium assembly(GO:0046847) |
0.0 | 0.9 | GO:0046839 | phospholipid dephosphorylation(GO:0046839) |
0.0 | 0.8 | GO:0042738 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.0 | 0.7 | GO:0001878 | response to yeast(GO:0001878) |
0.1 | 0.6 | GO:0072393 | microtubule anchoring at microtubule organizing center(GO:0072393) |
0.1 | 0.6 | GO:0097090 | presynaptic membrane organization(GO:0097090) postsynaptic membrane assembly(GO:0097104) presynaptic membrane assembly(GO:0097105) |
0.0 | 0.6 | GO:0072348 | sulfur compound transport(GO:0072348) |
0.2 | 0.5 | GO:0043654 | recognition of apoptotic cell(GO:0043654) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.2 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.1 | 0.5 | GO:0098890 | extrinsic component of postsynaptic membrane(GO:0098890) |
0.0 | 0.5 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 0.5 | GO:0044666 | MLL3/4 complex(GO:0044666) |
0.0 | 0.5 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.0 | 0.5 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 0.4 | GO:0031213 | RSF complex(GO:0031213) |
0.0 | 0.4 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706) |
0.0 | 0.3 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.0 | 0.3 | GO:0043186 | P granule(GO:0043186) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.8 | GO:0042936 | dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916) |
0.3 | 1.5 | GO:0008131 | primary amine oxidase activity(GO:0008131) |
0.1 | 1.2 | GO:0008239 | dipeptidyl-peptidase activity(GO:0008239) |
0.3 | 0.9 | GO:0080132 | fatty acid alpha-hydroxylase activity(GO:0080132) |
0.0 | 0.9 | GO:0042577 | lipid phosphatase activity(GO:0042577) |
0.0 | 0.8 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.2 | 0.6 | GO:0004771 | sterol esterase activity(GO:0004771) |
0.1 | 0.6 | GO:0034452 | dynactin binding(GO:0034452) |
0.0 | 0.6 | GO:0005520 | insulin-like growth factor binding(GO:0005520) |
0.0 | 0.6 | GO:0070006 | metalloaminopeptidase activity(GO:0070006) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.5 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
0.0 | 0.4 | PID FAS PATHWAY | FAS (CD95) signaling pathway |
0.0 | 0.3 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.0 | 0.2 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 0.1 | PID S1P S1P3 PATHWAY | S1P3 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
0.0 | 0.5 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 0.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.0 | 0.4 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 0.3 | REACTOME OPSINS | Genes involved in Opsins |
0.0 | 0.3 | REACTOME DESTABILIZATION OF MRNA BY TRISTETRAPROLIN TTP | Genes involved in Destabilization of mRNA by Tristetraprolin (TTP) |
0.0 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 0.3 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 0.2 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.0 | 0.1 | REACTOME DCC MEDIATED ATTRACTIVE SIGNALING | Genes involved in DCC mediated attractive signaling |