PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc12b | dr11_v1_chr11_+_2172335_2172335 | 0.73 | 4.4e-04 | Click! |
hoxc12a | dr11_v1_chr23_+_36063599_36063599 | 0.36 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_20715020 Show fit | 4.82 |
ENSDART00000015224
|
growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1 |
|
chr23_+_36087219 Show fit | 3.45 |
ENSDART00000154825
|
homeobox C3a |
|
chr12_+_27129659 Show fit | 3.22 |
ENSDART00000076161
|
homeobox B5b |
|
chr19_+_7424347 Show fit | 2.74 |
ENSDART00000004622
|
splicing factor 3b, subunit 4 |
|
chr2_-_17114852 Show fit | 2.74 |
ENSDART00000006549
|
PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) |
|
chr11_+_2198831 Show fit | 2.62 |
ENSDART00000160515
|
homeobox C6b |
|
chr14_+_32022272 Show fit | 2.58 |
ENSDART00000105760
|
zic family member 6 |
|
chr15_+_29116063 Show fit | 2.58 |
ENSDART00000016112
ENSDART00000153609 ENSDART00000155630 |
calpain, small subunit 1 b |
|
chr17_+_21295132 Show fit | 2.56 |
ENSDART00000103845
|
enolase family member 4 |
|
chr3_-_49382896 Show fit | 2.50 |
ENSDART00000169115
|
si:ch73-167f10.1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 11.4 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
0.5 | 4.8 | GO:0000185 | activation of MAPKKK activity(GO:0000185) |
0.5 | 3.8 | GO:0060017 | parathyroid gland development(GO:0060017) |
0.2 | 3.3 | GO:0035108 | limb morphogenesis(GO:0035108) |
0.1 | 3.3 | GO:0042147 | retrograde transport, endosome to Golgi(GO:0042147) |
0.2 | 3.2 | GO:0010002 | cardioblast differentiation(GO:0010002) |
0.2 | 2.7 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.2 | 2.7 | GO:0048026 | positive regulation of mRNA splicing, via spliceosome(GO:0048026) |
0.3 | 2.6 | GO:0035912 | establishment of cell polarity involved in ameboidal cell migration(GO:0003365) aorta morphogenesis(GO:0035909) dorsal aorta morphogenesis(GO:0035912) |
0.3 | 2.6 | GO:0032889 | regulation of vacuole fusion, non-autophagic(GO:0032889) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.1 | 2.7 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
0.1 | 2.7 | GO:0005657 | replication fork(GO:0005657) |
0.3 | 2.6 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 2.6 | GO:0055037 | recycling endosome(GO:0055037) |
0.4 | 2.5 | GO:0005915 | cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915) |
0.1 | 2.3 | GO:0070822 | Sin3-type complex(GO:0070822) |
0.3 | 2.2 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.0 | 2.2 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.1 | 1.6 | GO:0031209 | SCAR complex(GO:0031209) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 31.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.1 | 3.1 | GO:0004697 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
0.5 | 2.7 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.3 | 2.6 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.3 | 2.5 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.0 | 2.4 | GO:0003724 | RNA helicase activity(GO:0003724) |
0.6 | 2.3 | GO:0035516 | oxidative DNA demethylase activity(GO:0035516) |
0.0 | 2.2 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.3 | 2.1 | GO:0004849 | uridine kinase activity(GO:0004849) |
0.0 | 2.0 | GO:0008173 | RNA methyltransferase activity(GO:0008173) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 2.7 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.5 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 1.7 | PID ATM PATHWAY | ATM pathway |
0.1 | 1.5 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 1.3 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.3 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 1.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 1.0 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 3.4 | REACTOME SCFSKP2 MEDIATED DEGRADATION OF P27 P21 | Genes involved in SCF(Skp2)-mediated degradation of p27/p21 |
0.8 | 2.5 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.1 | 2.4 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 1.9 | REACTOME G ALPHA S SIGNALLING EVENTS | Genes involved in G alpha (s) signalling events |
0.0 | 1.7 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.0 | 1.4 | REACTOME METABOLISM OF NON CODING RNA | Genes involved in Metabolism of non-coding RNA |
0.1 | 1.3 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.1 | 1.2 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 1.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |