PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
hoxc13a | dr11_v1_chr23_+_36052944_36052944 | -0.27 | 2.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_22003942 Show fit | 3.65 |
ENSDART00000091013
|
si:dkey-57a22.15 |
|
chr25_+_31277415 Show fit | 2.03 |
ENSDART00000036275
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr25_+_31276842 Show fit | 1.81 |
ENSDART00000187238
|
troponin I type 2a (skeletal, fast), tandem duplicate 4 |
|
chr24_-_26282672 Show fit | 1.65 |
ENSDART00000176663
|
actinodin1 |
|
chr6_+_13779857 Show fit | 1.51 |
ENSDART00000154793
|
transmembrane protein 198b |
|
chr24_-_6158933 Show fit | 1.41 |
ENSDART00000021609
|
glutamate decarboxylase 2 |
|
chr22_-_16997475 Show fit | 1.24 |
ENSDART00000090237
|
nuclear factor I/A |
|
chr5_+_2815021 Show fit | 1.21 |
ENSDART00000020472
|
4-hydroxyphenylpyruvate dioxygenase a |
|
chr22_-_16997887 Show fit | 1.16 |
ENSDART00000138233
|
nuclear factor I/A |
|
chr21_+_42226113 Show fit | 1.11 |
ENSDART00000170362
|
gamma-aminobutyric acid type A receptor beta2 subunit |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.0 | 3.6 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.0 | 1.7 | GO:0090263 | positive regulation of canonical Wnt signaling pathway(GO:0090263) |
0.5 | 1.4 | GO:0009449 | gamma-aminobutyric acid biosynthetic process(GO:0009449) |
0.2 | 1.2 | GO:0006572 | tyrosine catabolic process(GO:0006572) |
0.0 | 0.9 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.1 | 0.8 | GO:0061298 | retina vasculature development in camera-type eye(GO:0061298) |
0.2 | 0.7 | GO:0045724 | positive regulation of cilium assembly(GO:0045724) |
0.1 | 0.7 | GO:0071881 | adenylate cyclase-inhibiting adrenergic receptor signaling pathway(GO:0071881) |
0.1 | 0.7 | GO:0010269 | response to selenium ion(GO:0010269) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.4 | GO:0005861 | troponin complex(GO:0005861) |
0.0 | 0.9 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 0.6 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 0.5 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
0.0 | 0.4 | GO:0031307 | integral component of mitochondrial outer membrane(GO:0031307) |
0.1 | 0.3 | GO:0016600 | flotillin complex(GO:0016600) |
0.0 | 0.3 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
0.0 | 0.3 | GO:0044224 | juxtaparanode region of axon(GO:0044224) |
0.0 | 0.2 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 0.2 | GO:0061700 | GATOR2 complex(GO:0061700) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.5 | 1.4 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
0.4 | 1.2 | GO:0003868 | 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868) |
0.0 | 0.9 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.0 | 0.9 | GO:0005251 | delayed rectifier potassium channel activity(GO:0005251) |
0.0 | 0.8 | GO:0004602 | glutathione peroxidase activity(GO:0004602) |
0.1 | 0.7 | GO:0004938 | alpha2-adrenergic receptor activity(GO:0004938) |
0.0 | 0.6 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.0 | 0.6 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.2 | 0.5 | GO:0042166 | neurotransmitter binding(GO:0042165) acetylcholine binding(GO:0042166) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.1 | 1.3 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.0 | 0.7 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 0.2 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.0 | 0.2 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |
0.0 | 0.1 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |