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PRJEB1986: zebrafish developmental stages transcriptome

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Results for hoxc13a

Z-value: 0.63

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Transcription factors associated with hoxc13a

Gene Symbol Gene ID Gene Info
hoxc13a
ENSDARG00000070353 homeobox C13a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc13adr11_v1_chr23_+_36052944_36052944-0.272.7e-01Click!

Activity profile of hoxc13a motif

Sorted Z-values of hoxc13a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_22003942 3.65 ENSDART00000091013
si:dkey-57a22.15
si:dkey-57a22.15
chr25_+_31277415 2.03 ENSDART00000036275
tnni2a.4
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr25_+_31276842 1.81 ENSDART00000187238
tnni2a.4
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr24_-_26282672 1.65 ENSDART00000176663
and1
actinodin1
chr6_+_13779857 1.51 ENSDART00000154793
tmem198b
transmembrane protein 198b
chr24_-_6158933 1.41 ENSDART00000021609
gad2
glutamate decarboxylase 2
chr22_-_16997475 1.24 ENSDART00000090237
nfia
nuclear factor I/A
chr5_+_2815021 1.21 ENSDART00000020472
hpda
4-hydroxyphenylpyruvate dioxygenase a
chr22_-_16997887 1.16 ENSDART00000138233
nfia
nuclear factor I/A
chr21_+_42226113 1.11 ENSDART00000170362
GABRB2 (1 of many)
gamma-aminobutyric acid type A receptor beta2 subunit
chr20_+_23238833 1.05 ENSDART00000074167
ociad2
OCIA domain containing 2
chr12_-_4028079 0.86 ENSDART00000128676
si:ch211-180a12.2
si:ch211-180a12.2
chr9_-_33749556 0.84 ENSDART00000149383
ndp
Norrie disease (pseudoglioma)
chr22_-_24297510 0.82 ENSDART00000163297
si:ch211-117l17.6
si:ch211-117l17.6
chr4_+_37406676 0.78 ENSDART00000130981
si:ch73-134f24.1
si:ch73-134f24.1
chr9_-_23990416 0.73 ENSDART00000113176
col6a3
collagen, type VI, alpha 3
chr6_+_42338309 0.73 ENSDART00000015277
gpx1b
glutathione peroxidase 1b
chr1_-_40994259 0.73 ENSDART00000101562
adra2c
adrenoceptor alpha 2C
chr10_-_34867401 0.73 ENSDART00000145545
dclk1a
doublecortin-like kinase 1a
chr6_+_49771626 0.73 ENSDART00000134207
ctsz
cathepsin Z
chr3_-_23474416 0.72 ENSDART00000161672
si:dkey-225f5.5
si:dkey-225f5.5
chr14_+_24215046 0.69 ENSDART00000079215
stc2a
stanniocalcin 2a
chr11_-_33857911 0.68 ENSDART00000165370
nxph2b
neurexophilin 2b
chr22_+_18477934 0.67 ENSDART00000132684
cilp2
cartilage intermediate layer protein 2
chr1_-_22803147 0.66 ENSDART00000086867
tapt1b
transmembrane anterior posterior transformation 1b
chr3_+_59851537 0.66 ENSDART00000180997
CU693479.1

chr24_+_1294176 0.65 ENSDART00000106637
si:ch73-134f24.1
si:ch73-134f24.1
chr21_-_37790727 0.60 ENSDART00000162907
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr14_+_16083818 0.60 ENSDART00000168462
rnf103
ring finger protein 103
chr25_+_19947298 0.60 ENSDART00000067648
kcna6a
potassium voltage-gated channel, shaker-related, subfamily, member 6 a
chr6_+_49771372 0.59 ENSDART00000063251
ctsz
cathepsin Z
chr25_-_31739309 0.58 ENSDART00000098896
acot19
acyl-CoA thioesterase 19
chr15_-_24883956 0.57 ENSDART00000113199
aipl1
aryl hydrocarbon receptor interacting protein-like 1
chr6_-_54816567 0.53 ENSDART00000150079
tnni1b
troponin I type 1b (skeletal, slow)
chr15_-_23647078 0.52 ENSDART00000059366
ckmb
creatine kinase, muscle b
chr19_-_28367413 0.51 ENSDART00000079092
si:dkey-261i16.5
si:dkey-261i16.5
chr1_-_22370660 0.50 ENSDART00000127506
si:ch73-380n15.2
si:ch73-380n15.2
chr15_-_917274 0.47 ENSDART00000156624
si:dkey-77f5.15
si:dkey-77f5.15
chr25_-_15214161 0.46 ENSDART00000031499
wt1a
wilms tumor 1a
chr7_-_31941330 0.44 ENSDART00000144682
bdnf
brain-derived neurotrophic factor
chr16_-_36099492 0.41 ENSDART00000180905
CU499336.2

chr13_-_1349922 0.41 ENSDART00000140970
si:ch73-52p7.1
si:ch73-52p7.1
chr2_-_20323901 0.41 ENSDART00000125531
plppr5a
phospholipid phosphatase related 5a
chr23_+_33934228 0.40 ENSDART00000134237
si:ch211-148l7.4
si:ch211-148l7.4
chr6_-_40098641 0.40 ENSDART00000017402
ip6k2b
inositol hexakisphosphate kinase 2b
chr22_+_24214665 0.39 ENSDART00000163980
ENSDART00000167996
glrx2
glutaredoxin 2
chr20_+_51006362 0.39 ENSDART00000028084
mpp5b
membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5)
chr9_-_33785093 0.38 ENSDART00000140779
ENSDART00000059837
fundc1
FUN14 domain containing 1
chr3_+_35005062 0.38 ENSDART00000181163
prkcbb
protein kinase C, beta b
chr22_+_12361317 0.38 ENSDART00000189963
ENSDART00000159614
r3hdm1
R3H domain containing 1
chr19_+_7506380 0.36 ENSDART00000182837
prcc
papillary renal cell carcinoma (translocation-associated)
chr16_+_36906693 0.35 ENSDART00000160645
si:ch73-215d9.1
si:ch73-215d9.1
chr21_-_21594841 0.34 ENSDART00000132490
or133-2
odorant receptor, family H, subfamily 133, member 2
chr3_-_7656059 0.34 ENSDART00000170917
junbb
JunB proto-oncogene, AP-1 transcription factor subunit b
chr9_-_12574473 0.33 ENSDART00000191372
ENSDART00000193667
igf2bp2a
insulin-like growth factor 2 mRNA binding protein 2a
chr6_+_49412754 0.33 ENSDART00000027398
kcna2a
potassium voltage-gated channel, shaker-related subfamily, member 2a
chr17_-_3291369 0.31 ENSDART00000181840
CABZ01007222.1

chr15_+_16387088 0.31 ENSDART00000101789
flot2b
flotillin 2b
chr5_-_34993242 0.29 ENSDART00000134516
ENSDART00000051295
btf3
basic transcription factor 3
chr7_+_5905091 0.28 ENSDART00000167099
CU459186.3
Histone H3.2
chr25_-_3230187 0.28 ENSDART00000160545
cib1
calcium and integrin binding 1 (calmyrin)
chr23_-_12158685 0.28 ENSDART00000135035
fam217b
family with sequence similarity 217, member B
chr14_+_36497250 0.27 ENSDART00000184727
TENM3
si:dkey-237h12.3
chr2_-_56655769 0.25 ENSDART00000113589
gpx4b
glutathione peroxidase 4b
chr5_+_21891305 0.24 ENSDART00000136788
si:ch73-92i20.1
si:ch73-92i20.1
chr1_+_961607 0.24 ENSDART00000184660
n6amt1
N-6 adenine-specific DNA methyltransferase 1
chr23_+_36115541 0.24 ENSDART00000130090
hoxc6a
homeobox C6a
chr20_-_2713120 0.24 ENSDART00000138753
ENSDART00000104606
rars2
arginyl-tRNA synthetase 2, mitochondrial (putative)
chr9_+_45428041 0.24 ENSDART00000193087
adarb1b
adenosine deaminase, RNA-specific, B1b
chr23_+_28582865 0.23 ENSDART00000020296
l1cama
L1 cell adhesion molecule, paralog a
chr3_-_36210344 0.23 ENSDART00000025326
csnk1da
casein kinase 1, delta a
chr19_+_4916233 0.19 ENSDART00000159512
ppp1r1b
protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr18_+_34225520 0.19 ENSDART00000126115
v2rl1
vomeronasal 2 receptor, l1
chr7_-_48263516 0.19 ENSDART00000006619
ENSDART00000142370
ENSDART00000148273
ENSDART00000147968
rbpms2b
RNA binding protein with multiple splicing 2b
chr16_-_26296477 0.17 ENSDART00000157553
erfl1
Ets2 repressor factor like 1
chr16_-_17541890 0.17 ENSDART00000131328
clcn1b
chloride channel, voltage-sensitive 1b
chr11_-_16093018 0.17 ENSDART00000139309
ENSDART00000139819
SPATA1
si:dkey-205k8.5
chr14_-_7045009 0.16 ENSDART00000112082
rufy1
RUN and FYVE domain containing 1
chr12_+_20700961 0.16 ENSDART00000016099
si:ch211-119c20.2
si:ch211-119c20.2
chr16_+_22618620 0.16 ENSDART00000185728
ENSDART00000041625
chrnb2b
cholinergic receptor, nicotinic, beta 2b
chr13_-_10261383 0.16 ENSDART00000080808
six3a
SIX homeobox 3a
chr2_-_39759059 0.15 ENSDART00000007333
slc25a36a
solute carrier family 25 (pyrimidine nucleotide carrier ), member 36a
chr5_-_12031174 0.15 ENSDART00000159896
castor1
cytosolic arginine sensor for mTORC1 subunit 1
chr9_+_12896340 0.14 ENSDART00000136417
si:ch211-167j6.5
si:ch211-167j6.5
chr1_+_58282449 0.14 ENSDART00000131475
si:dkey-222h21.7
si:dkey-222h21.7
chr25_-_7887274 0.13 ENSDART00000157276
si:ch73-151m17.5
si:ch73-151m17.5
chr6_-_19665114 0.13 ENSDART00000168985
usp43a
ubiquitin specific peptidase 43a
chr19_+_34230108 0.12 ENSDART00000141950
galnt12
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
chr7_+_24114694 0.11 ENSDART00000127177
mrpl52
mitochondrial ribosomal protein L52
chr4_-_2727491 0.11 ENSDART00000141760
ENSDART00000039083
ENSDART00000134442
slco1c1
solute carrier organic anion transporter family, member 1C1
chr20_-_27086143 0.10 ENSDART00000008590
itpk1a
inositol-tetrakisphosphate 1-kinase a
chr1_-_17803614 0.10 ENSDART00000138475
sorbs2a
sorbin and SH3 domain containing 2a
chr2_+_38881165 0.10 ENSDART00000141850
carmil3
capping protein regulator and myosin 1 linker 3
chr7_-_23873173 0.10 ENSDART00000101408
zgc:162171
zgc:162171
chr4_-_23082985 0.09 ENSDART00000133644
magi2a
membrane associated guanylate kinase, WW and PDZ domain containing 2a
chr18_+_17151916 0.09 ENSDART00000175488
trhr2
thyrotropin releasing hormone receptor 2
chr14_-_5546497 0.09 ENSDART00000054877
fgf24
fibroblast growth factor 24
chr5_-_31875645 0.09 ENSDART00000098160
tmem119b
transmembrane protein 119b
chr5_-_71838520 0.08 ENSDART00000174396
CU927890.1

chr4_-_23083187 0.08 ENSDART00000009768
magi2a
membrane associated guanylate kinase, WW and PDZ domain containing 2a
chr23_+_9508538 0.08 ENSDART00000010697
osbpl2b
oxysterol binding protein-like 2b
chr2_+_38147761 0.08 ENSDART00000135307
sall2
spalt-like transcription factor 2
chr25_-_13871118 0.07 ENSDART00000160866
cry2
cryptochrome circadian clock 2
chr25_-_1720736 0.07 ENSDART00000097256
SLC6A13
solute carrier family 6 member 13
chr6_+_24661736 0.07 ENSDART00000169283
znf644b
zinc finger protein 644b
chr8_+_18044257 0.07 ENSDART00000029255
glis1b
GLIS family zinc finger 1b
chr18_+_18405992 0.06 ENSDART00000080174
n4bp1
nedd4 binding protein 1
chr8_+_14792830 0.06 ENSDART00000139972
cacna1ea
calcium channel, voltage-dependent, R type, alpha 1E subunit a
chr6_-_19664848 0.06 ENSDART00000159749
usp43a
ubiquitin specific peptidase 43a
chr6_+_55285578 0.06 ENSDART00000180183
zgc:109913
zgc:109913
chr21_-_25756119 0.05 ENSDART00000002341
cldnc
claudin c
chr9_+_22364997 0.05 ENSDART00000188054
ENSDART00000046116
crygs3
crystallin, gamma S3
chr13_-_24447332 0.05 ENSDART00000043004
slc1a4
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
chr21_-_21537452 0.04 ENSDART00000142549
or133-7
odorant receptor, family H, subfamily 133, member 7
chr4_+_37485430 0.04 ENSDART00000182667
si:dkeyp-86c4.1
si:dkeyp-86c4.1
chr13_+_40729618 0.04 ENSDART00000074829
ankrd2
ankyrin repeat domain 2 (stretch responsive muscle)
chr22_-_3299100 0.04 ENSDART00000160305
si:zfos-943e10.1
si:zfos-943e10.1
chr6_-_8480815 0.03 ENSDART00000162300
rasal3
RAS protein activator like 3
chr21_-_21148623 0.03 ENSDART00000184364
ank1b
ankyrin 1, erythrocytic b
chr25_+_336503 0.03 ENSDART00000160395
CU929262.1

chr20_+_48116476 0.02 ENSDART00000043938
tram2
translocation associated membrane protein 2
chr16_+_30933044 0.02 ENSDART00000184453
gstk2
glutathione S-transferase kappa 2
chr25_-_3892686 0.02 ENSDART00000043172
tmem258
transmembrane protein 258
chr21_-_35419486 0.01 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr3_+_46764278 0.01 ENSDART00000136051
ENSDART00000164930
prkcsh
protein kinase C substrate 80K-H
chr4_+_42419522 0.00 ENSDART00000135737
si:dkey-16p6.1
si:dkey-16p6.1
chr17_+_31221761 0.00 ENSDART00000155580
ccdc32
coiled-coil domain containing 32

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc13a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.2 0.7 GO:0045724 positive regulation of cilium assembly(GO:0045724)
0.2 1.2 GO:0006572 tyrosine catabolic process(GO:0006572)
0.1 0.7 GO:0071881 adenylate cyclase-inhibiting adrenergic receptor signaling pathway(GO:0071881)
0.1 0.7 GO:0010269 response to selenium ion(GO:0010269)
0.1 0.8 GO:0061298 retina vasculature development in camera-type eye(GO:0061298)
0.1 0.5 GO:0061032 visceral serous pericardium development(GO:0061032) glomerular visceral epithelial cell fate commitment(GO:0072149) glomerular epithelial cell fate commitment(GO:0072314)
0.1 4.4 GO:0003009 skeletal muscle contraction(GO:0003009)
0.1 0.2 GO:1990519 pyrimidine nucleotide transport(GO:0006864) mitochondrial pyrimidine nucleotide import(GO:1990519)
0.0 0.2 GO:0051145 smooth muscle cell differentiation(GO:0051145)
0.0 0.9 GO:0006910 phagocytosis, recognition(GO:0006910)
0.0 0.5 GO:0006603 phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314)
0.0 0.4 GO:0048672 positive regulation of collateral sprouting(GO:0048672)
0.0 0.1 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.1 GO:0033690 positive regulation of osteoblast proliferation(GO:0033690)
0.0 3.6 GO:0002088 lens development in camera-type eye(GO:0002088)
0.0 0.4 GO:0090162 establishment of epithelial cell polarity(GO:0090162)
0.0 0.3 GO:0030431 sleep(GO:0030431)
0.0 0.5 GO:0007271 synaptic transmission, cholinergic(GO:0007271)
0.0 1.7 GO:0090263 positive regulation of canonical Wnt signaling pathway(GO:0090263)
0.0 0.4 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.0 0.2 GO:0006382 adenosine to inosine editing(GO:0006382)
0.0 0.3 GO:0045661 regulation of myoblast differentiation(GO:0045661)
0.0 0.2 GO:0021631 optic nerve morphogenesis(GO:0021631)
0.0 0.3 GO:0050853 B cell receptor signaling pathway(GO:0050853)
0.0 0.3 GO:0060974 cell migration involved in heart formation(GO:0060974)
0.0 0.1 GO:0007197 adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway(GO:0007197)
0.0 0.2 GO:1904262 negative regulation of TORC1 signaling(GO:1904262)
0.0 0.4 GO:0032543 mitochondrial translation(GO:0032543)
0.0 0.2 GO:0045773 positive regulation of axon extension(GO:0045773)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 4.4 GO:0005861 troponin complex(GO:0005861)
0.1 0.3 GO:0016600 flotillin complex(GO:0016600)
0.0 0.3 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.0 0.9 GO:0042571 immunoglobulin complex, circulating(GO:0042571)
0.0 0.5 GO:0005892 acetylcholine-gated channel complex(GO:0005892)
0.0 0.4 GO:0031307 integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.3 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.2 GO:0044295 axonal growth cone(GO:0044295)
0.0 0.2 GO:0061700 GATOR2 complex(GO:0061700)
0.0 0.6 GO:1902710 GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.4 1.2 GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity(GO:0003868)
0.2 0.5 GO:0042166 neurotransmitter binding(GO:0042165) acetylcholine binding(GO:0042166)
0.1 0.7 GO:0004938 alpha2-adrenergic receptor activity(GO:0004938)
0.1 0.3 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.2 GO:0015218 pyrimidine nucleotide transmembrane transporter activity(GO:0015218)
0.1 0.2 GO:0034618 arginine binding(GO:0034618)
0.0 0.2 GO:0047066 phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066)
0.0 0.9 GO:0034987 immunoglobulin receptor binding(GO:0034987)
0.0 0.2 GO:0008046 axon guidance receptor activity(GO:0008046)
0.0 0.8 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.3 GO:0035173 histone kinase activity(GO:0035173)
0.0 3.6 GO:0005212 structural constituent of eye lens(GO:0005212)
0.0 0.2 GO:0031697 beta-1 adrenergic receptor binding(GO:0031697) type II activin receptor binding(GO:0070699)
0.0 0.5 GO:0004111 creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.1 GO:0052726 inositol tetrakisphosphate 1-kinase activity(GO:0047325) inositol-1,3,4-trisphosphate 6-kinase activity(GO:0052725) inositol-1,3,4-trisphosphate 5-kinase activity(GO:0052726)
0.0 0.4 GO:0005163 nerve growth factor receptor binding(GO:0005163) neurotrophin receptor binding(GO:0005165)
0.0 0.4 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)
0.0 0.6 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.2 GO:0003726 double-stranded RNA adenosine deaminase activity(GO:0003726)
0.0 0.9 GO:0005251 delayed rectifier potassium channel activity(GO:0005251)
0.0 0.6 GO:0004890 GABA-A receptor activity(GO:0004890)
0.0 0.4 GO:0042577 lipid phosphatase activity(GO:0042577)
0.0 0.1 GO:0004997 thyrotropin-releasing hormone receptor activity(GO:0004997)
0.0 0.1 GO:0016907 G-protein coupled acetylcholine receptor activity(GO:0016907)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 2.3 PID HNF3A PATHWAY FOXA1 transcription factor network
0.0 0.7 NABA COLLAGENS Genes encoding collagen proteins
0.0 0.4 PID AJDISS 2PATHWAY Posttranslational regulation of adherens junction stability and dissassembly

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.1 1.3 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.7 REACTOME NCAM1 INTERACTIONS Genes involved in NCAM1 interactions
0.0 0.1 REACTOME TRANSPORT OF ORGANIC ANIONS Genes involved in Transport of organic anions
0.0 0.2 REACTOME DARPP 32 EVENTS Genes involved in DARPP-32 events
0.0 0.2 REACTOME MITOCHONDRIAL TRNA AMINOACYLATION Genes involved in Mitochondrial tRNA aminoacylation